Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00036
         (753 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20580.1 68414.m02569 small nuclear ribonucleoprotein, putati...    72   4e-13
At1g76300.1 68414.m08862 small nuclear ribonucleoprotein D3, put...    70   2e-12
At5g27720.1 68418.m03325 small nuclear ribonucleoprotein, putati...    35   0.067
At1g20600.1 68414.m02573 DNA-binding protein-related low similar...    34   0.088
At5g47820.2 68418.m05908 kinesin-like protein (FRA1) identical t...    33   0.27 
At5g47820.1 68418.m05907 kinesin-like protein (FRA1) identical t...    33   0.27 
At5g38580.1 68418.m04665 hypothetical protein                          29   4.4  
At4g02840.1 68417.m00384 small nuclear ribonucleoprotein D1, put...    29   4.4  
At5g43890.1 68418.m05367 flavin-containing monooxygenase family ...    28   5.8  
At3g50240.1 68416.m05494 kinesin motor protein-related KINESIN-L...    28   5.8  

>At1g20580.1 68414.m02569 small nuclear ribonucleoprotein, putative
           / snRNP, putative / Sm protein, putative similar to
           small nuclear ribonucleoprotein Sm D3 (snRNP core
           protein D3, Sm-D3) [Mus musculus] SWISS-PROT:P43331
          Length = 131

 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 28/51 (54%), Positives = 40/51 (78%)
 Frame = +1

Query: 97  VNMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVT 249
           ++ S+G+P+K+LHEA GH+VT E  +GE+YRG +IE EDN NCQ+  +T T
Sbjct: 1   MSRSLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYT 51



 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 24/35 (68%), Positives = 35/35 (100%)
 Frame = +3

Query: 252 QDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKR 356
           +DG+V+QLE+V+IRGSK+RF+++PD+LK+APMFKR
Sbjct: 53  KDGKVSQLEHVFIRGSKVRFMVIPDILKHAPMFKR 87


>At1g76300.1 68414.m08862 small nuclear ribonucleoprotein D3,
           putative / snRNP core protein D3, putative / Sm protein
           D3, putative similar to SWISS-PROT:P43331 small nuclear
           ribonucleoprotein Sm D3 (snRNP core protein D3, Sm-D3)
           [Mouse]
          Length = 128

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 26/51 (50%), Positives = 40/51 (78%)
 Frame = +1

Query: 97  VNMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVT 249
           ++ S+G+P+K+LHE+ GH+V+ E  +GE+YRG +IE EDN NCQ+  +T T
Sbjct: 1   MSRSLGIPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYT 51



 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 31/50 (62%), Positives = 40/50 (80%)
 Frame = +3

Query: 252 QDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNKPTAGRGKSAIL 401
           +DG+V+QLE+V+IRGS +RFL++PDMLKNAPMF     K   G+GKSA L
Sbjct: 53  KDGKVSQLEHVFIRGSLVRFLVIPDMLKNAPMF-----KDVRGKGKSASL 97


>At5g27720.1 68418.m03325 small nuclear ribonucleoprotein, putative
           / snRNP, putative / Sm protein, putative similar to
           SWISS-PROT:Q9QXA5 U6 snRNA-associated Sm-like protein
           LSm4 [Mus musculus]
          Length = 129

 Score = 34.7 bits (76), Expect = 0.067
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 115 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVT 249
           +P+ +L  A+GH +  E   GE Y G L+  +  MN  +  V  T
Sbjct: 2   LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICT 46


>At1g20600.1 68414.m02573 DNA-binding protein-related low similarity
           to RAV2 [Arabidopsis thaliana] GI:3868859
          Length = 237

 Score = 34.3 bits (75), Expect = 0.088
 Identities = 13/20 (65%), Positives = 19/20 (95%)
 Frame = +3

Query: 249 IQDGRVAQLENVYIRGSKIR 308
           + DG+V+QLE+V+IRGSK+R
Sbjct: 213 VTDGKVSQLEHVFIRGSKVR 232


>At5g47820.2 68418.m05908 kinesin-like protein (FRA1) identical to
            kinesin-like protein [Arabidopsis thaliana] GI:27260890;
            contains Pfam profile PF00225: Kinesin motor domain
          Length = 1035

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 416  WSRTSRWKRWGPPWRLARWVRTISTLALR 502
            W    +WK W  PWRL+ W+RT     L+
Sbjct: 995  WIVQFKWK-WQKPWRLSEWIRTSDETLLK 1022


>At5g47820.1 68418.m05907 kinesin-like protein (FRA1) identical to
            kinesin-like protein [Arabidopsis thaliana] GI:27260890;
            contains Pfam profile PF00225: Kinesin motor domain
          Length = 1035

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 416  WSRTSRWKRWGPPWRLARWVRTISTLALR 502
            W    +WK W  PWRL+ W+RT     L+
Sbjct: 995  WIVQFKWK-WQKPWRLSEWIRTSDETLLK 1022


>At5g38580.1 68418.m04665 hypothetical protein
          Length = 168

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 183 NFTGICFTSHYMTFRLVKYFNRHTDRHVYVLVKKN 79
           NF   C  S   T    +YF R  DR + V + KN
Sbjct: 88  NFVPECLLSSLQTLLWSRYFGRQQDRDIAVYILKN 122


>At4g02840.1 68417.m00384 small nuclear ribonucleoprotein D1,
           putative / snRNP core protein D1, putative / Sm protein
           D1, putative similar to small nuclear ribonucleoprotein
           Sm D1 (snRNP core protein D1, Sm-D1, Sm-D autoantigen)
           [Mouse] SWISS-PROT:P13641
          Length = 116

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
 Frame = +3

Query: 273 LENVYIRGSKIRFLILPDMLKNAPMF-----KRQGNKPTAGR 383
           L+++ +RG+ IR+ ILPD L    +      + +  KPTAG+
Sbjct: 55  LDHLSVRGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAGK 96


>At5g43890.1 68418.m05367 flavin-containing monooxygenase family
           protein / FMO family protein similar to
           flavin-containing monooxygenases YUCCA [gi:16555352],
           YUCCA2 [gi:16555354], and YUCCA3 [gi:16555356] from
           Arabidopsis thaliana; contains Pfam profile PF00743
          Length = 424

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +1

Query: 136 EAEGHVV-TCETNTGEVYRGK--LIEAEDNMNCQMTLVTVTYRMAELHSSRMCTSVVPR 303
           E EG V+ +CE  +GE YRGK  L+    N   +++L    +        R    V+PR
Sbjct: 173 EFEGEVIHSCEYKSGEKYRGKSVLVVGCGNSGMEVSLDLANHNANASMVVRSSVHVLPR 231


>At3g50240.1 68416.m05494 kinesin motor protein-related KINESIN-LIKE
            PROTEIN KIF4, Homo sapiens, EMBL:AF179308
          Length = 1051

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 416  WSRTSRWKRWGPPWRLARWVR 478
            W    +WK W  PW+L+ W++
Sbjct: 1000 WLLQFKWK-WQKPWKLSEWIK 1019


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,295,859
Number of Sequences: 28952
Number of extensions: 295466
Number of successful extensions: 706
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)