Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00032
         (558 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g15740.1 68415.m01802 zinc finger (C2H2 type) family protein ...    30   1.2  
At4g32630.1 68417.m04645 hypothetical protein                          29   2.8  
At1g09350.1 68414.m01046 galactinol synthase, putative contains ...    29   2.8  
At5g15130.1 68418.m01773 WRKY family transcription factor contai...    28   3.7  
At4g01430.2 68417.m00184 nodulin MtN21 family protein similar to...    28   4.9  
At4g01430.1 68417.m00183 nodulin MtN21 family protein similar to...    28   4.9  
At1g27090.1 68414.m03302 glycine-rich protein                          28   4.9  
At5g54620.1 68418.m06801 ankyrin repeat family protein contains ...    27   6.4  
At5g28760.1 68418.m03532 hypothetical protein contains Pfam prof...    27   6.4  
At1g01070.2 68414.m00008 nodulin MtN21 family protein similar to...    27   6.4  
At1g01070.1 68414.m00009 nodulin MtN21 family protein similar to...    27   6.4  
At4g07520.1 68417.m01174 hypothetical protein contains Pfam prof...    27   8.5  
At1g19870.1 68414.m02492 calmodulin-binding family protein conta...    27   8.5  

>At2g15740.1 68415.m01802 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 329

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 291 PHCSTNSLGMTHVQFIQQSRITHNR 217
           PHC  N+ G + +Q  Q S++ H+R
Sbjct: 10  PHCDDNNRGFSSIQMNQNSQMVHSR 34


>At4g32630.1 68417.m04645 hypothetical protein 
          Length = 531

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +3

Query: 249 TGRESSPVSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHPSDHSLIYLGTMALT 416
           T   +SP ++ ++ G +G V+P    N+ T+ +    +   PSD S+    T+A+T
Sbjct: 357 TSFATSPTTAHAHSGSSGPVVPVAPDNLNTKETATLANNQGPSDFSMEQT-TLAIT 411


>At1g09350.1 68414.m01046 galactinol synthase, putative contains
           Pfam profile: PF01501 glycosyl transferase family 8
          Length = 334

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 143 CRQKQHSHSLPRSLPNLGWNLNIALVVKCSRVSS 42
           C QK+  H  P++LP    +L+ A V++C++  S
Sbjct: 299 CGQKEDVHRKPKTLPQFFTDLSEADVLQCAKAPS 332


>At5g15130.1 68418.m01773 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain; TMV
           response-related gene product, Nicotiana tabacum,
           EMBL:AB024510
          Length = 548

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 20/73 (27%), Positives = 31/73 (42%)
 Frame = -2

Query: 224 TIAAKTPSATRCRKRCHDPRIIVPVRTCRQKQHSHSLPRSLPNLGWNLNIALVVKCSRVS 45
           T+A   P   + ++   D  I++   T  +  HSHSLP S   +    + A  +  S  S
Sbjct: 253 TVAPGCPVRKQVQRCADDMSILI---TTYEGTHSHSLPLSATTMASTTSAAASMLLSGSS 309

Query: 44  SRICTDYISNRSY 6
           S    + I N  Y
Sbjct: 310 SSPAAEMIGNNLY 322


>At4g01430.2 68417.m00184 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 305

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 43  ELTLEHFTTKAMLRFHPKLGSERGSEWLCCFCLHVRTGTIILGSWHLF 186
           EL+  H   +A    +   G ++  +WL   CL++  GT++L  W LF
Sbjct: 97  ELSNPHSHPQARHNNNNNNGHDQTKKWLLG-CLYLVIGTVLLSLWMLF 143


>At4g01430.1 68417.m00183 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 365

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 43  ELTLEHFTTKAMLRFHPKLGSERGSEWLCCFCLHVRTGTIILGSWHLF 186
           EL+  H   +A    +   G ++  +WL   CL++  GT++L  W LF
Sbjct: 157 ELSNPHSHPQARHNNNNNNGHDQTKKWLLG-CLYLVIGTVLLSLWMLF 203


>At1g27090.1 68414.m03302 glycine-rich protein
          Length = 420

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 302 RCTAHTTVKCGNSSQPILSTCFTS 373
           RC  H  +   NS QPI S C TS
Sbjct: 200 RCVEHAKLWLANSEQPIESNCNTS 223


>At5g54620.1 68418.m06801 ankyrin repeat family protein contains
           Pfam domain, PF00023: Ankyrin repeat
          Length = 431

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 298 VRPTLLHELTGDDSRPVHPAIEDHAQSLLKLLVPL 194
           ++PT   +L  D   P+H A+E+H   L   LV +
Sbjct: 59  LKPTFAKKLNSDGVSPLHLAVENHQVQLALELVKI 93


>At5g28760.1 68418.m03532 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 520

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 236 DCWMNWT*VIPSEFVEQCGAHWRCTAHTTV 325
           +CW     V  SE+ + C    RCT H TV
Sbjct: 136 ECWFVVNGVPISEYQKTCKVWTRCTVHQTV 165


>At1g01070.2 68414.m00008 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 318

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 88  HPKLGSERGSEWLCCFCLHVRTGTIILGSWHLF 186
           H     ++ + WL   CL++  GT++L  W LF
Sbjct: 131 HNNNDQDKANNWLLG-CLYLTIGTVLLSLWMLF 162


>At1g01070.1 68414.m00009 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 365

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 88  HPKLGSERGSEWLCCFCLHVRTGTIILGSWHLF 186
           H     ++ + WL   CL++  GT++L  W LF
Sbjct: 178 HNNNDQDKANNWLLG-CLYLTIGTVLLSLWMLF 209


>At4g07520.1 68417.m01174 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 734

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 266 PSEFVEQCGAHWRCTAHTTVK 328
           PSE+V+ C    RCT   TVK
Sbjct: 171 PSEYVKTCKIGTRCTVQQTVK 191


>At1g19870.1 68414.m02492 calmodulin-binding family protein contains
           Pfam profile: PF00612 IQ calmodulin-binding motif
          Length = 794

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 170 PRIIVPVRTCRQKQHSHSLPRSLPNL 93
           PR + P ++ + K   H+ PRS P+L
Sbjct: 724 PRFMQPTQSAKAKVQEHNSPRSSPDL 749


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,821,977
Number of Sequences: 28952
Number of extensions: 311974
Number of successful extensions: 849
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)