Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00031
(485 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g73230.1 68414.m08475 nascent polypeptide-associated complex ... 59 1e-09
At1g17880.1 68414.m02212 nascent polypeptide-associated complex ... 58 2e-09
At2g43110.1 68415.m05352 expressed protein 33 0.13
At5g47690.1 68418.m05887 expressed protein 31 0.41
At3g47840.1 68416.m05215 pentatricopeptide (PPR) repeat-containi... 28 3.8
At1g69780.1 68414.m08029 homeobox-leucine zipper protein 13 (HB-... 28 3.8
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 28 3.8
At2g47280.1 68415.m05903 pectinesterase family protein contains ... 27 5.1
At1g53050.1 68414.m06007 protein kinase family protein contains ... 27 5.1
At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a '... 27 8.9
At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a '... 27 8.9
>At1g73230.1 68414.m08475 nascent polypeptide-associated complex
(NAC) domain-containing protein similar to SP|P20290
Transcription factor BTF3 (RNA polymerase B
transcription factor 3) {Homo sapiens}; contains Pfam
profile PF01849: NAC domain
Length = 165
Score = 59.3 bits (137), Expect = 1e-09
Identities = 28/44 (63%), Positives = 31/44 (70%)
Frame = +3
Query: 135 MNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDKKLQHRSK 266
MN EKL K+ + VR GGKGT RRKKK VH T TDDK+LQ K
Sbjct: 1 MNREKLMKMANTVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLK 44
Score = 55.2 bits (127), Expect = 2e-08
Identities = 23/46 (50%), Positives = 36/46 (78%)
Frame = +1
Query: 346 PEAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRIA 483
P+ QAS+AANT+ ++G + K+ ++LP I+SQLGPD L+ LK++A
Sbjct: 71 PKVQASIAANTWVVSGTPQTKKLQDILPQIISQLGPDNLDNLKKLA 116
Score = 41.5 bits (93), Expect = 3e-04
Identities = 19/37 (51%), Positives = 28/37 (75%)
Frame = +2
Query: 242 QKTAASLKKLSVNTIPGIEEVNMIKEDGTVIHFNNPK 352
++ ++LK++ VN+IP IEEVN+ K+D VI F NPK
Sbjct: 37 KRLQSTLKRVGVNSIPAIEEVNIFKDD-VVIQFINPK 72
>At1g17880.1 68414.m02212 nascent polypeptide-associated complex
(NAC) domain-containing protein / BTF3b-like
transcription factor, putative similar to SP|P20290
Transcription factor BTF3 (RNA polymerase B
transcription factor 3) {Homo sapiens}; contains Pfam
profile PF01849: NAC domain; identical to cDNA
BTF3b-like factor GI:5912423
Length = 165
Score = 58.4 bits (135), Expect = 2e-09
Identities = 28/44 (63%), Positives = 31/44 (70%)
Frame = +3
Query: 135 MNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDKKLQHRSK 266
MN EKL K+ + VR GGKGT RRKKK VH T TDDK+LQ K
Sbjct: 1 MNREKLMKMANTVRTGGKGTVRRKKKAVHKTNTTDDKRLQSTLK 44
Score = 54.8 bits (126), Expect = 3e-08
Identities = 22/46 (47%), Positives = 36/46 (78%)
Frame = +1
Query: 346 PEAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRIA 483
P+ QAS+AANT+ ++G + K+ ++LP I+SQLGPD ++ LK++A
Sbjct: 71 PKVQASIAANTWVVSGSPQTKKLQDILPQIISQLGPDNMDNLKKLA 116
Score = 41.9 bits (94), Expect = 2e-04
Identities = 19/37 (51%), Positives = 28/37 (75%)
Frame = +2
Query: 242 QKTAASLKKLSVNTIPGIEEVNMIKEDGTVIHFNNPK 352
++ ++LK++ VN+IP IEEVN+ K+D VI F NPK
Sbjct: 37 KRLQSTLKRIGVNSIPAIEEVNIFKDD-VVIQFINPK 72
>At2g43110.1 68415.m05352 expressed protein
Length = 288
Score = 32.7 bits (71), Expect = 0.13
Identities = 21/54 (38%), Positives = 31/54 (57%)
Frame = +3
Query: 69 LNSVIKKCPVLTLTQFTLKNSRMNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTA 230
L+S+ K+CP + L LK E++ L+ +V IG GTP R KK+V + A
Sbjct: 172 LHSLTKQCPAVKLFSKHLKVE----EQVSLLKKRVNIGS-GTPNRIKKLVDIEA 220
>At5g47690.1 68418.m05887 expressed protein
Length = 1638
Score = 31.1 bits (67), Expect = 0.41
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Frame = -3
Query: 471 QSVQAVGSELAEDTREHLCGLLILPVSGNRERVR-GQRRLCFGLLK-CITVPSSLI--IF 304
Q++ V E +ED +EHL +L+ + NR VR RRL +++ C S I
Sbjct: 172 QNIMIVLLEESEDVQEHLLLILLSKLGRNRSDVRDAARRLAMKVIEHCAPKVESDIKQFL 231
Query: 303 TSSMPGIVFTDNFLSDAAVFCH--LWPQ*REQPSSCVSVCPYL 181
SSM G D+ S + + H ++ R P + V PYL
Sbjct: 232 ISSMSG----DSRFSSSQIDYHEVIYDLYRCAPQALSGVAPYL 270
>At3g47840.1 68416.m05215 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 706
Score = 27.9 bits (59), Expect = 3.8
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Frame = -3
Query: 405 ILPVSGNRERVRGQRR-----LCFGLLKCITVPSSLI 310
+L VSGN + G R+ LCFGL + TV SSLI
Sbjct: 417 LLSVSGNMAVIEGGRQVHALALCFGLEQNSTVRSSLI 453
>At1g69780.1 68414.m08029 homeobox-leucine zipper protein 13 (HB-13)
/ HD-ZIP transcription factor 13 identical to homeobox
gene 13 protein (GP:12325190) [Arabidopsis thaliana]
Length = 294
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 108 TQFTLKNSRMNSEKLKKLQSQVRIGGKGTPRRKKKV 215
+Q K R+N E++K L+ +G K P RK ++
Sbjct: 80 SQMGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQL 115
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 27.9 bits (59), Expect = 3.8
Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 1/101 (0%)
Frame = +1
Query: 154 RNSSRKYASEVRAHRDARRRLFTLLRPQMTKNCSIAQKVVSEHNSWHR-RGKYDQRGRYC 330
R SR EVR R +R R R + + + SEH S R R + + R
Sbjct: 135 RRRSRDRDREVRHRRRSRSRS----RSRSERRSRSEHRHKSEHRSRSRSRSRSKSKRRSG 190
Query: 331 DTL*QPEAQASLAANTFAITGHGENKQTTEMLPGILSQLGP 453
+ P+ LAA A G + TT +PG+ S + P
Sbjct: 191 FDMAPPDM---LAATAVAAAGQVPSVPTTATIPGMFSNMFP 228
>At2g47280.1 68415.m05903 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 320
Score = 27.5 bits (58), Expect = 5.1
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 206 EEGCSRYCGHR*QKTAASLKKLSVNTIPGIEEVNMIKEDGTVIHF 340
E GC+ G + LKKLS++ + G V+ I +DG + F
Sbjct: 271 EAGCTG-AGADTSQRVPWLKKLSLSEVDGFASVSFIDQDGWISRF 314
>At1g53050.1 68414.m06007 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 694
Score = 27.5 bits (58), Expect = 5.1
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 339 LTTRSTSVAGREHVRDYRTRGE*ADHRDAPGYPQPARTRRLEPTEKDC 482
L+ RS S GR + +D + AD+ PG+ A TR P ++ C
Sbjct: 546 LSRRSASAKGRRNYQDSQKVSSIADYSAMPGF---AATRTGAPQQETC 590
>At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a
'Morpheus molecule') [Arabidopsis thaliana]
gi|8132770|gb|AAF73381.1|
Length = 2001
Score = 26.6 bits (56), Expect = 8.9
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +1
Query: 199 DARRRLFTLLRPQMTKNCSI 258
+++RRL T+L+P+M K C +
Sbjct: 948 ESQRRLHTVLKPKMAKLCQV 967
>At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a
'Morpheus molecule') [Arabidopsis thaliana]
gi|8132770|gb|AAF73381.1|
Length = 2001
Score = 26.6 bits (56), Expect = 8.9
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +1
Query: 199 DARRRLFTLLRPQMTKNCSI 258
+++RRL T+L+P+M K C +
Sbjct: 948 ESQRRLHTVLKPKMAKLCQV 967
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,384,157
Number of Sequences: 28952
Number of extensions: 200673
Number of successful extensions: 609
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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