Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0281.Seq
         (757 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15) ...    29   3.3  
At3g10690.1 68416.m01286 DNA gyrase subunit A family protein sim...    28   7.7  
At1g23840.1 68414.m03007 expressed protein                             28   7.7  

>At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15)
           almost identical to ubiquitin-specific protease 15
           GI:11993475 [Arabidopsis thaliana], 7 amino acid
           difference
          Length = 924

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +2

Query: 377 CKVAPGTPPLSNITVYERSSTNNVVILAATVSSVHRLVFPHP 502
           C++  GT P +   V + ++ NN V+L AT  S++ +  P+P
Sbjct: 852 CRMFSGTKPETRYFVEQETNHNNTVVLDAT-PSLYPIPAPYP 892


>At3g10690.1 68416.m01286 DNA gyrase subunit A family protein
           similar to SP|P94605 DNA gyrase subunit A (EC 5.99.1.3).
           {Clostridium acetobutylicum}; contains Pfam profiles
           PF00521: DNA gyrase/topoisomerase IV A subunit, PF03989:
           DNA gyrase C-terminal domain beta-propeller
          Length = 950

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 547 SPSICHDTSSINNPNNYFILN 609
           +P +CH T+SI NPN+   L+
Sbjct: 2   TPVLCHSTASIPNPNSLMSLS 22


>At1g23840.1 68414.m03007 expressed protein
          Length = 338

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = -2

Query: 483 LCTDETVAANITTLFVLLRS*TVILLSGGVPGATLHLKFA 364
           LC ++     IT+L+VLL S +V L  G   G+T++L FA
Sbjct: 129 LCQNKVGGCLITSLYVLLLSTSVFL--GLFSGSTIYLYFA 166


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,217,999
Number of Sequences: 28952
Number of extensions: 302670
Number of successful extensions: 615
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)