Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0268.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16480.1 68416.m02103 mitochondrial processing peptidase alph...    35   0.047
At1g51980.1 68414.m05863 mitochondrial processing peptidase alph...    33   0.19 
At1g65790.1 68414.m07466 S-receptor protein kinase, putative sim...    29   3.1  
At5g49580.1 68418.m06136 DNAJ heat shock N-terminal domain-conta...    27   9.5  

>At3g16480.1 68416.m02103 mitochondrial processing peptidase alpha
           subunit, putative similar to mitochondrial processing
           peptidase alpha subunit, mitochondrial precursor,
           Alpha-MPP (Ubiquinol-cytochrome C reductase subunit II)
           [Potato] SWISS-PROT:P29677
          Length = 499

 Score = 34.7 bits (76), Expect = 0.047
 Identities = 21/77 (27%), Positives = 32/77 (41%)
 Frame = +3

Query: 252 PVTRVTIAFKAGSRYEPQAELGLSHVLGSAGGLTTXNISSXLXQRKLSQIGAYVSASGDR 431
           P   + +    GS YE     G +H+L      +T N S     R++  IG   SAS  R
Sbjct: 93  PAASIGLYVDCGSIYETPQFRGATHLLERMAFKSTLNRSHFRLVREIEAIGGNTSASASR 152

Query: 432 EFIXYXLEGXXGXIXXM 482
           E + Y ++     +  M
Sbjct: 153 EQMGYTIDALKTYVPEM 169


>At1g51980.1 68414.m05863 mitochondrial processing peptidase alpha
           subunit, putative similar to mitochondrial processing
           peptidase alpha subunit, mitochondrial precursor,
           Alpha-MPP (Ubiquinol-cytochrome C reductase subunit II)
           [Potato] SWISS-PROT:P29677
          Length = 503

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 20/77 (25%), Positives = 32/77 (41%)
 Frame = +3

Query: 252 PVTRVTIAFKAGSRYEPQAELGLSHVLGSAGGLTTXNISSXLXQRKLSQIGAYVSASGDR 431
           P   + +    GS YE     G +H+L      +T N +     R++  IG   SAS  R
Sbjct: 97  PAASIGLYVDCGSIYEAPYFHGATHLLERMAFKSTLNRTHFRLVREIEAIGGNTSASASR 156

Query: 432 EFIXYXLEGXXGXIXXM 482
           E + Y ++     +  M
Sbjct: 157 EQMSYTIDALKTYVPEM 173


>At1g65790.1 68414.m07466 S-receptor protein kinase, putative
           similar to similar to PIR|T05180|T05180 S-receptor
           kinase ARK3 precursor - [Arabidopsis thaliana]
          Length = 843

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/65 (23%), Positives = 33/65 (50%)
 Frame = +1

Query: 94  LTXMASKTLVAPFIRHVTIRGYXQXAPAVKKXVRIQSSVLPXKTFVXALDNGSPLPVSQS 273
           LT  ++KT+++P    +   G+   A + +  + I   ++P +T+V   +  +PL  S  
Sbjct: 36  LTISSNKTIISP--SQIFELGFFNPASSSRWYLGIWYKIIPIRTYVWVANRDNPLSSSNG 93

Query: 274 PSKLA 288
             K++
Sbjct: 94  TLKIS 98


>At5g49580.1 68418.m06136 DNAJ heat shock N-terminal
           domain-containing protein contains similarity to S-locus
           protein 5 GI:6069485 from [Brassica rapa]; contains Pfam
           profile PF00226 DnaJ domain
          Length = 695

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 180 YCRRXLXVAPDRNMTNKGGDESFGCHXRKFLETLGSNATKAYD 52
           Y ++ + V PD+NM N+   E+F      +   L S   K+YD
Sbjct: 430 YRKKAMLVHPDKNMGNERAAEAFKKLQNAYEVLLDSVKQKSYD 472


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,333,617
Number of Sequences: 28952
Number of extensions: 144322
Number of successful extensions: 285
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)