Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0260.Seq
(796 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g04170.1 68415.m00402 meprin and TRAF homology domain-contain... 31 0.67
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 31 0.88
At1g64450.1 68414.m07306 proline-rich family protein contains pr... 31 1.2
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 30 1.5
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 30 1.5
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 30 1.5
At3g02670.1 68416.m00258 proline-rich family protein contains pr... 30 2.0
At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containi... 29 3.6
At1g64105.1 68414.m07262 no apical meristem (NAM) family protein... 29 3.6
At4g28990.1 68417.m04143 RNA-binding protein-related contains we... 29 4.7
At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B) cont... 28 8.2
At5g07540.1 68418.m00863 glycine-rich protein (GRP16) oleosin; g... 28 8.2
At4g29780.1 68417.m04241 expressed protein 28 8.2
At4g02320.1 68417.m00316 pectinesterase family protein contains ... 28 8.2
At3g17820.1 68416.m02272 glutamine synthetase (GS1) identical to... 28 8.2
>At2g04170.1 68415.m00402 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to NtN2 [Medicago truncatula] GI:3776084; contains Pfam
profile PF00917: MATH domain
Length = 420
Score = 31.5 bits (68), Expect = 0.67
Identities = 21/44 (47%), Positives = 21/44 (47%)
Frame = -1
Query: 781 PGISPRRETGFPPGIARKLFPEIPGFRARFPREPAGWPRGFPGP 650
PG P GF PG P PGF R PR P PRG PGP
Sbjct: 31 PGFGPGGP-GFGPG-GPGFGPGGPGFGGRGPRGPGFGPRG-PGP 71
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 31.1 bits (67), Expect = 0.88
Identities = 25/78 (32%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Frame = +2
Query: 557 GXEXPE*APGTWFPFGAWFRIXGGLMGSHPWGAWKTPGPTRGLPGETGPETWNFRE--KF 730
G P PG FP G+ F + P+G GP G + P + F
Sbjct: 223 GPPPPMMGPGA-FPRGSQFTSGPMMAPPPPYGQPPNAGPFTGNSPLSSPPAHSIPPPTNF 281
Query: 731 PGNPRGEPGFPPGGNPRG 784
PG P G P PGG P G
Sbjct: 282 PGVPYGRPPM-PGGFPYG 298
>At1g64450.1 68414.m07306 proline-rich family protein contains
proline rich extensins, INTERPRO:IPR0002965
Length = 342
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/21 (66%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Frame = +2
Query: 728 FPGNPR--GEPGFPPGGNPRG 784
FPGNPR G PGFP G P G
Sbjct: 244 FPGNPRSMGPPGFPGIGGPPG 264
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = -1
Query: 790 QLAPGISPRRETGFPPGIARKLFPEIPGFRARFPREPAGWPRGFPGPPRVA 638
Q+ P + TGFPP + R++ GF A P + WP G VA
Sbjct: 152 QVPPPLMSFEATGFPPELLREVLS--AGFSAPTPIQAQSWPIAMQGRDIVA 200
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = -1
Query: 790 QLAPGISPRRETGFPPGIARKLFPEIPGFRARFPREPAGWPRGFPGPPRVA 638
Q+ P + TGFPP + R++ GF A P + WP G VA
Sbjct: 152 QVPPPLMSFEATGFPPELLREVLS--AGFSAPTPIQAQSWPIAMQGRDIVA 200
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = -1
Query: 790 QLAPGISPRRETGFPPGIARKLFPEIPGFRARFPREPAGWPRGFPGPPRVA 638
Q+ P + TGFPP + R++ GF A P + WP G VA
Sbjct: 152 QVPPPLMSFEATGFPPELLREVLS--AGFSAPTPIQAQSWPIAMQGRDIVA 200
>At3g02670.1 68416.m00258 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 217
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 638 SHPWGAWKTPGPTRGLPGETGPETWNFREKFPGNPRGEPGFPPGGNP 778
S P+ + ++ PT +PG G + FP +P G PG P G+P
Sbjct: 54 SDPFSSLQSSPPTSPIPGSPG---FRLPFPFPSSPGGNPGIP--GSP 95
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 662 TPGPTRGLPGETGPETWNFREKFPGNPRGEPGFP 763
+PG G+PG G + FP +P G PG P
Sbjct: 84 SPGGNPGIPGSPG---FRLPFPFPSSPGGNPGIP 114
>At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containing
protein similar to Hsc70-interacting protein (Hip) from
{Homo sapiens} SP|P50502, {Rattus norvegicus} SP|P50503;
contains Pfam profile PF00515: tetratricopeptide repeat
(TPR) domain
Length = 441
Score = 29.1 bits (62), Expect = 3.6
Identities = 25/70 (35%), Positives = 26/70 (37%)
Frame = +2
Query: 584 GTWFPFGAWFRIXGGLMGSHPWGAWKTPGPTRGLPGETGPETWNFREKFPGNPRGEPGFP 763
G FP G GG+ G P G PG G PG G G P G PG
Sbjct: 290 GGGFPGGMPGGFPGGMPGGFPGGMGGMPG---GFPGGMG--------GMGGMPGGFPGGM 338
Query: 764 PGGNPRGQLG 793
GG P G G
Sbjct: 339 GGGMPAGMGG 348
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Frame = -2
Query: 783 PRGFP---PGGKPGSPRGLPGNF 724
P GFP PGG PG G+PG F
Sbjct: 298 PGGFPGGMPGGFPGGMGGMPGGF 320
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = +3
Query: 648 GGPGKPRGQPAGSRGKRARKPGISGKSFLAIPGGNPVSLRGEIPGANWG 794
G PG G P G G G+ G + GG P + G +PG G
Sbjct: 308 GFPGGMGGMPGGFPGGMGGMGGMPGGFPGGMGGGMPAGMGGGMPGMGGG 356
>At1g64105.1 68414.m07262 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain
Length = 161
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/43 (41%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = +2
Query: 581 PGTWFPFGAWFRIXGGLMGSHPWGAW-KTPGPTRGLPGETGPE 706
PG WF FG R L G H G+W G L ETG E
Sbjct: 60 PGEWFYFGKRNRKYSNLEGVHCEGSWILEDGCIAVLSKETGEE 102
>At4g28990.1 68417.m04143 RNA-binding protein-related contains weak
similarity to Swiss-Prot:Q01844 RNA-binding protein EWS
(EWS oncogene)(Ewing sarcoma breakpoint region 1
protein) [Homo sapiens]
Length = 347
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -1
Query: 784 APGISPRRETGFPPGIARKLFPEIPGFRARFPREPAGWPRGFPGPPR 644
AP SP PP + + G+R+ P GWPR +P PPR
Sbjct: 185 APANSPPLPRLLPPPMNHSPRRDFNGYRS----PPRGWPRDYP-PPR 226
>At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B)
contains similarity to 40S ribosomal protein S10
Length = 180
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +2
Query: 683 LPGETGPETWNFREKFPGNPRGEPGFPPGGNPRG 784
LP E P T ++K G P G G P G PRG
Sbjct: 83 LPSEIVPATLKKQQKPLGRPFGGGGDRPRGPPRG 116
>At5g07540.1 68418.m00863 glycine-rich protein (GRP16) oleosin;
glycine-rich protein 16 (GRP16) PMID:11431566
Length = 244
Score = 27.9 bits (59), Expect = 8.2
Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Frame = +2
Query: 623 GGLMGSHPWGAWKTPGPTRGLPGETGPETWNFREKFPGNP-RGEPGFPPGGNPRGQLG 793
GG G P GA GP G +G + PG G+PG PG P G G
Sbjct: 181 GGASGGGPGGA-SGGGPGGASGGASGDKPEGAPGDKPGGAWGGKPGKKPGHKPEGARG 237
>At4g29780.1 68417.m04241 expressed protein
Length = 540
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 669 GQPAGSRGKRARKPGISGKSFLAIPGGNPVSLRGEIPGAN 788
G+ GSR KRARK ++ G + L +P A+
Sbjct: 137 GETDGSRSKRARKTAVAAVVSAVASGADTTGLAAPVPTAD 176
>At4g02320.1 68417.m00316 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 518
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +1
Query: 421 DFILGDFSVVIDNCS--AAL*FXTSPVVVTDESTKKDETPDGL 543
DFI GD SVV NCS A ++ T + + P G+
Sbjct: 356 DFIFGDASVVFQNCSLYARRPNPNQKIIYTAQGRENSREPTGI 398
>At3g17820.1 68416.m02272 glutamine synthetase (GS1) identical to
glutamine synthetase, cytosolic isozyme (glutamate--
ammonia ligase, GS1) [Arabidopsis thaliana]
SWISS-PROT:Q9LVI8
Length = 354
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2
Query: 789 NWPRGFPPGGKPGSPRG 739
NWP G+P GG PG P+G
Sbjct: 140 NWPIGWPVGGYPG-PQG 155
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,415,271
Number of Sequences: 28952
Number of extensions: 314473
Number of successful extensions: 846
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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