Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0259.Seq
         (475 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g70600.1 68414.m08133 60S ribosomal protein L27A (RPL27aC) id...   105   2e-23
At1g23290.1 68414.m02913 60S ribosomal protein L27A (RPL27aB) si...   105   2e-23
At1g12960.1 68414.m01505 60S ribosomal protein L27A (RPL27aA) si...    44   5e-05
At3g20720.1 68416.m02622 expressed protein                             30   0.92 
At2g16100.1 68415.m01846 hypothetical protein                          29   2.1  
At4g38560.1 68417.m05459 expressed protein                             27   8.6  

>At1g70600.1 68414.m08133 60S ribosomal protein L27A (RPL27aC)
           identical to 60S ribosomal protein L27A GB:P49637
           [Arabidopsis thaliana]
          Length = 146

 Score =  105 bits (252), Expect = 2e-23
 Identities = 47/82 (57%), Positives = 53/82 (64%)
 Frame = +2

Query: 5   KKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRK 184
           KK RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR FH  +
Sbjct: 6   KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLR 65

Query: 185 NKNFCPVLNLDKLWTLVSEQTR 250
           NK FCP++NLDKLW+LV E  +
Sbjct: 66  NKFFCPIVNLDKLWSLVPEDVK 87


>At1g23290.1 68414.m02913 60S ribosomal protein L27A (RPL27aB)
           similar to 60S RIBOSOMAL PROTEIN L27A GB:P49637
           GI:1710530 from [Arabidopsis thaliana]
          Length = 146

 Score =  105 bits (252), Expect = 2e-23
 Identities = 47/82 (57%), Positives = 53/82 (64%)
 Frame = +2

Query: 5   KKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRK 184
           KK RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR FH  +
Sbjct: 6   KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLR 65

Query: 185 NKNFCPVLNLDKLWTLVSEQTR 250
           NK FCP++NLDKLW+LV E  +
Sbjct: 66  NKFFCPIVNLDKLWSLVPEDVK 87


>At1g12960.1 68414.m01505 60S ribosomal protein L27A (RPL27aA)
           similar to GB:BAA96068 from [Panax ginseng]
          Length = 104

 Score = 44.0 bits (99), Expect = 5e-05
 Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = +2

Query: 107 HHRINMDKYHPGYFGK--LGMRNFHFRKNKNFCPVLNLDKLWTLV 235
           H R    +  PG  G   +GMR FH  +NK +C ++NLDKLW++V
Sbjct: 19  HGRFGKHRKLPGSRGNAGVGMRYFHKLRNKFYCQIVNLDKLWSMV 63


>At3g20720.1 68416.m02622 expressed protein 
          Length = 1083

 Score = 29.9 bits (64), Expect = 0.92
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +2

Query: 188 KNFCPVLN-LDK-LWTLVSEQTRLSMHLLQMARSP 286
           KNFCP++  LD   W +V +   +S+H LQ+  SP
Sbjct: 344 KNFCPLIYPLDSGPWQIVQDVPLISLHSLQVKPSP 378


>At2g16100.1 68415.m01846 hypothetical protein 
          Length = 250

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 103 APSQNQHGQVPSWILWQTW 159
           +P  +Q  Q+P WILW+ W
Sbjct: 20  SPRTSQFHQLPLWILWRIW 38


>At4g38560.1 68417.m05459 expressed protein
          Length = 521

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +2

Query: 89  NAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLSMHLL 268
           N GG +H+     KYH      +      + K+++ C +L  D L +     T  S+ +L
Sbjct: 230 NIGGNYHYAAQASKYHANKADSV------YTKDRDKCVILYPDILLSPQENLTSRSITML 283

Query: 269 -QMARSPSSILSK 304
            Q +R+P    SK
Sbjct: 284 PQKSRTPLDKQSK 296


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,960,670
Number of Sequences: 28952
Number of extensions: 176956
Number of successful extensions: 470
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)