Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0254.Seq
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15680.1 68418.m01834 expressed protein                             31   0.73 
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro...    30   1.7  
At1g15130.1 68414.m01807 hydroxyproline-rich glycoprotein family...    29   3.0  
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro...    28   6.8  
At2g35230.2 68415.m04322 VQ motif-containing protein contains PF...    28   6.8  
At2g35230.1 68415.m04321 VQ motif-containing protein contains PF...    28   6.8  
At1g40125.1 68414.m04763 hypothetical protein member of hypothet...    28   6.8  
At1g10390.1 68414.m01171 nucleoporin family protein contains Pfa...    28   6.8  
At5g63840.1 68418.m08014 alpha-glucosidase, putative similar to ...    27   9.0  

>At5g15680.1 68418.m01834 expressed protein 
          Length = 2151

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 180  SRLRQSTVHSNEIGERQRSQRTGYEAPGELVRARVREGVPPPLCAG 317
            S + +   ++N++GE QRS+  GYE P         EGV P +  G
Sbjct: 1810 SSMPRDEFNTNDLGEFQRSESRGYEMPPSSGTLPKFEGVQPLVLKG 1855


>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
           protein contains similarity to SP|Q02917 Early nodulin
           55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
           domain
          Length = 370

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 367 PAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSSPGAS 251
           P+ S AH  P+    H P+HS   +PS + A   SP  S
Sbjct: 245 PSHSPAHA-PSHSPAHAPSHSPAHSPSHSPATPKSPSPS 282



 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = -2

Query: 424 LSRHETXSSSHRVANVLXVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSS 263
           +S     S SH  ++    P+ S     P    +H P+HS   TPS + A T S
Sbjct: 188 ISHTPALSPSHATSHSPATPSPSPKSPSPV---SHSPSHSPAHTPSHSPAHTPS 238



 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 367 PAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSSPGASYP 245
           P+ S AH  P+    H P+HS    PS + A + S   + P
Sbjct: 237 PSHSPAHA-PSHSPAHAPSHSPAHAPSHSPAHSPSHSPATP 276


>At1g15130.1 68414.m01807 hydroxyproline-rich glycoprotein family
           protein 
          Length = 846

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -3

Query: 333 AGPRTALH--TAAAAPPRGPSLGPAHPGPH 250
           +GP  ++H  TA++ PP   +  P+HP PH
Sbjct: 733 SGPYPSVHQPTASSPPPPPETQNPSHPHPH 762


>At5g58160.1 68418.m07280 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|Q05858 Formin (Limb deformity protein) {Gallus
           gallus}; contains Pfam profile PF02181: Formin Homology
           2(FH2) Domain
          Length = 1307

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 336 PAGPRTALHTAAAAPPRGPSLGPAHPGP 253
           PA P   +HT++  PP  P   PA P P
Sbjct: 715 PAPPTPIVHTSSPPPPPPPPPPPAPPTP 742


>At2g35230.2 68415.m04322 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 295

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
 Frame = -3

Query: 294 PPRGPSLGPAHPGPH------IRCADFFDAPQSRWNE 202
           P  GPS GP  P P       +  + FF  P  RWN+
Sbjct: 258 PGAGPSQGPPQPPPSPGLMFPLSPSGFFPMPSPRWND 294


>At2g35230.1 68415.m04321 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 402

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
 Frame = -3

Query: 294 PPRGPSLGPAHPGPH------IRCADFFDAPQSRWNE 202
           P  GPS GP  P P       +  + FF  P  RWN+
Sbjct: 365 PGAGPSQGPPQPPPSPGLMFPLSPSGFFPMPSPRWND 401


>At1g40125.1 68414.m04763 hypothetical protein member of
           hypothetical protein common family
          Length = 168

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 321 TALHTAAAAPPRGPSLGPAHPGPHIR 244
           TA+  +A+ PP+G  +G +   PH R
Sbjct: 45  TAVQVSASIPPQGAGVGASSSAPHYR 70


>At1g10390.1 68414.m01171 nucleoporin family protein contains Pfam
           profiles: PF04096 nucleoporin autopeptidase, PF03093
           nucleoporin FG repeat family
          Length = 1041

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 352 AHTGPAGGATHRPAHSGGGTPSRTLARTSS 263
           A + PA GA+  PA  G  TPS   + TSS
Sbjct: 262 ASSTPAFGASSTPAFGGSSTPSFGASNTSS 291


>At5g63840.1 68418.m08014 alpha-glucosidase, putative similar to
           alpha-glucosidase GI:2648032 from [Solanum tuberosum]
          Length = 921

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -1

Query: 353 GAYWSCRRGHAPPCTQRRRHPLADPRSDQLTRGLISGALTSL 228
           GAY+   RGHA   T+RR   L   R+ +L R  I    T L
Sbjct: 637 GAYYPFFRGHAHHDTKRREPWLFGERNTELMRDAIHTRYTLL 678


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,868,001
Number of Sequences: 28952
Number of extensions: 281831
Number of successful extensions: 896
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)