Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0250.Seq
         (797 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g47510.1 68414.m05273 endonuclease/exonuclease/phosphatase fa...    36   0.041
At3g54010.2 68416.m05972 peptidyl-prolyl cis-trans isomerase, pu...    31   1.2  
At3g54010.1 68416.m05971 peptidyl-prolyl cis-trans isomerase, pu...    31   1.2  
At4g19840.1 68417.m02908 lectin-related similar to PP2 lectin po...    30   1.5  
At2g35340.1 68415.m04333 RNA helicase, putative similar to ATP-d...    29   2.7  
At1g09270.2 68414.m01036 importin alpha-1 subunit, putative (IMP...    29   2.7  
At1g09270.1 68414.m01035 importin alpha-1 subunit, putative (IMP...    29   2.7  
At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (...    29   3.6  
At5g10760.1 68418.m01250 aspartyl protease family protein contai...    29   4.7  
At5g27460.1 68418.m03279 pentatricopeptide (PPR) repeat-containi...    28   6.2  

>At1g47510.1 68414.m05273 endonuclease/exonuclease/phosphatase
           family protein similar to SP|P32019 Type II
           inositol-1,4,5-trisphosphate 5-phosphatase  precursor
           (EC 3.1.3.56) {Homo sapiens}; contains Pfam profile
           PF03372: Endonuclease/Exonuclease/phosphatase family
          Length = 334

 Score = 35.5 bits (78), Expect = 0.041
 Identities = 15/31 (48%), Positives = 23/31 (74%)
 Frame = +2

Query: 290 IGSGNYDTNYNMFVPGTIFRIVFEIKDTDVI 382
           +GS +YDT++ + VP    RI+F+I+DTD I
Sbjct: 272 VGSSDYDTSHKIRVPAWTDRILFKIQDTDNI 302


>At3g54010.2 68416.m05972 peptidyl-prolyl cis-trans isomerase,
           putative / FK506-binding protein, putative / pasticcino
           1-D (PAS1-D) nearly identical to pasticcino 1-D
           [Arabidopsis thaliana] GI:3080740
          Length = 545

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +2

Query: 200 RRGAEGCGSPLRREVPPGHIISLSRKNGIWIGSGNYDTNYNMF 328
           R+  E C   L  E  PGH+  L R+   +I  G YD   N F
Sbjct: 376 RKSIETCNKVL--EAKPGHVKGLYRRGMAYIAGGEYDDARNDF 416


>At3g54010.1 68416.m05971 peptidyl-prolyl cis-trans isomerase,
           putative / FK506-binding protein, putative / pasticcino
           1-D (PAS1-D) nearly identical to pasticcino 1-D
           [Arabidopsis thaliana] GI:3080740
          Length = 635

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +2

Query: 200 RRGAEGCGSPLRREVPPGHIISLSRKNGIWIGSGNYDTNYNMF 328
           R+  E C   L  E  PGH+  L R+   +I  G YD   N F
Sbjct: 466 RKSIETCNKVL--EAKPGHVKGLYRRGMAYIAGGEYDDARNDF 506


>At4g19840.1 68417.m02908 lectin-related similar to PP2 lectin
           polypeptide [Cucurbita maxima] GI:410437
          Length = 246

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +2

Query: 236 REVPPGHIISLSRKNGIWIG-SGNYDTNYNMFVPGTIFRIVFEIKDTD 376
           +E P  ++ ++  KN  W+  +G +DT  N+  PG ++ +VF++K  D
Sbjct: 119 KESPNENVEAVGLKNVCWLDITGKFDTR-NL-TPGIVYEVVFKVKLED 164


>At2g35340.1 68415.m04333 RNA helicase, putative similar to
           ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
           contains Pfam profiles PF04408: Helicase associated
           domain (HA2), PF00271: Helicase conserved C-terminal
           domain
          Length = 1110

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 481 DPLHVRPGHNVFGHVEWYLREEVRMKLPLAVYRDDV 374
           D +H +P  +  G   +++ +E R  LP+  YRD +
Sbjct: 444 DEMHAKPSQDSAGKSAFHMLQEDRKALPIYTYRDQL 479


>At1g09270.2 68414.m01036 importin alpha-1 subunit, putative (IMPA4)
           similar to importin alpha-1 subunit (Karyopherin alpha-1
           subunit, KAP alpha) [Arabidopsis thaliana]
           SWISS-PROT:Q96321
          Length = 538

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +1

Query: 46  SILRSATWLLNIKCRFSPPT 105
           S+LR+ATW L+  CR  PPT
Sbjct: 223 SMLRNATWTLSNFCRGKPPT 242


>At1g09270.1 68414.m01035 importin alpha-1 subunit, putative (IMPA4)
           similar to importin alpha-1 subunit (Karyopherin alpha-1
           subunit, KAP alpha) [Arabidopsis thaliana]
           SWISS-PROT:Q96321
          Length = 538

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +1

Query: 46  SILRSATWLLNIKCRFSPPT 105
           S+LR+ATW L+  CR  PPT
Sbjct: 223 SMLRNATWTLSNFCRGKPPT 242


>At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein
           (Atm) identical to ataxia-telangiectasia mutated protein
           (Atm) [Arabidopsis thaliana] GI:7529272; contains Pfam
           profile PF00855: PWWP domain; contains GA donor splice
           site at exon 73
          Length = 3255

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 183 NLCAQEGEEPRDVVLHFDVRFHRDTS 260
           N+C QE + PR  +L+F V  H+  S
Sbjct: 573 NVCPQEEKTPRSTILNFQVTAHQGVS 598


>At5g10760.1 68418.m01250 aspartyl protease family protein contains
           Pfam domain, PF00026: eukaryotic aspartyl protease
          Length = 464

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/65 (29%), Positives = 28/65 (43%)
 Frame = +2

Query: 239 EVPPGHIISLSRKNGIWIGSGNYDTNYNMFVPGTIFRIVFEIKDTDVITIYCQGKFHSNF 418
           EV       L  K+GI +GSGNY     +  P     +VF+   +D+    C+    S +
Sbjct: 110 EVSEAKSTELPAKSGITLGSGNYIVTIGIGTPKHDLSLVFD-TGSDLTWTQCEPCLGSCY 168

Query: 419 LPKIP 433
             K P
Sbjct: 169 SQKEP 173


>At5g27460.1 68418.m03279 pentatricopeptide (PPR) repeat-containing
           protein low similarity to DNA-binding protein [Triticum
           aestivum] GI:6958202; contains Pfam profile PF01535: PPR
           repeat
          Length = 491

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/67 (25%), Positives = 29/67 (43%)
 Frame = -2

Query: 538 CSGLHHRSPFVREIKITMRDPLHVRPGHNVFGHVEWYLREEVRMKLPLAVYRDDVRVLDF 359
           C  +      + ++ + MR   H RP HN+   +  Y  +E +++   A  R D+  L  
Sbjct: 402 CENMEKAIDAMHQVFVLMRR-CHWRPSHNIVMAIAEYFEKEEKIEEATAYVR-DLHRLGL 459

Query: 358 EDYPKYR 338
              P YR
Sbjct: 460 ASLPLYR 466


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,309,759
Number of Sequences: 28952
Number of extensions: 413935
Number of successful extensions: 1178
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)