Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0225.Seq
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09580.1 68418.m01109 expressed protein  ; expression support...    30   1.5  
At1g68940.1 68414.m07891 armadillo/beta-catenin repeat protein-r...    29   3.5  
At2g17250.1 68415.m01992 expressed protein weak similarity to Ri...    28   6.1  
At3g57920.1 68416.m06456 squamosa promoter-binding protein, puta...    27   8.1  
At1g17590.3 68414.m02169 CCAAT-binding transcription factor (CBF...    27   8.1  
At1g17590.2 68414.m02168 CCAAT-binding transcription factor (CBF...    27   8.1  
At1g17590.1 68414.m02167 CCAAT-binding transcription factor (CBF...    27   8.1  

>At5g09580.1 68418.m01109 expressed protein  ; expression supported
           by MPSS
          Length = 393

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -2

Query: 527 DLNSESFLRCFV-EYFXSLSLYCPCTLCSI*CFEDEGTCLSSVTLLE 390
           DL  E F RC++ ++       C  T C I CF+   + L  + L++
Sbjct: 118 DLCLEGFERCYLLDFVVPKDFACQKTACEIVCFDHRNSALKRIGLIK 164


>At1g68940.1 68414.m07891 armadillo/beta-catenin repeat
           protein-related / U-box domain-containing protein ;
           contains Pfam profile PF04564: U-box domain
          Length = 1033

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 376 NISKPSSNVTELKQVPSSSKHQIEQSVQGQYNES 477
           N+SK  S  TE+  +PS S +   Q   G  +ES
Sbjct: 199 NLSKSQSQSTEIPDIPSQSSNASSQRKYGNLSES 232


>At2g17250.1 68415.m01992 expressed protein weak similarity to
           Ribosome biogenesis protein MAK21 (Swiss-Prot:Q12176)
           [Saccharomyces cerevisiae]
          Length = 577

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 460 GQYNESEXKYSTKHRRKLSEFRSK*SDAQKSGS 558
           G++NES+ K   K +  +  F ++ SD +KSG+
Sbjct: 449 GEHNESQPKTIKKRKLGIDYFNNQESDPKKSGA 481


>At3g57920.1 68416.m06456 squamosa promoter-binding protein,
           putative similar to squamosa promoter binding
           protein-like 9 [Arabidopsis thaliana] GI:5931677;
           contains Pfam profile PF03110: SBP domain
          Length = 354

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +1

Query: 142 TFGDDLAHSTPPYLTTYQAQVPRHKEFLS 228
           +F D +  + PP ++T+Q  +  H+++LS
Sbjct: 255 SFSDKVTMAQPPPISTHQPPISTHQQYLS 283


>At1g17590.3 68414.m02169 CCAAT-binding transcription factor
           (CBF-B/NF-YA) family protein contains Pfam profile:
           PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
           subunit B
          Length = 328

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 142 TFGDDLAHSTPPYLTT 189
           +F   +AHSTPPYL+T
Sbjct: 6   SFTSSVAHSTPPYLST 21


>At1g17590.2 68414.m02168 CCAAT-binding transcription factor
           (CBF-B/NF-YA) family protein contains Pfam profile:
           PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
           subunit B
          Length = 328

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 142 TFGDDLAHSTPPYLTT 189
           +F   +AHSTPPYL+T
Sbjct: 6   SFTSSVAHSTPPYLST 21


>At1g17590.1 68414.m02167 CCAAT-binding transcription factor
           (CBF-B/NF-YA) family protein contains Pfam profile:
           PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
           subunit B
          Length = 328

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 142 TFGDDLAHSTPPYLTT 189
           +F   +AHSTPPYL+T
Sbjct: 6   SFTSSVAHSTPPYLST 21


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,968,334
Number of Sequences: 28952
Number of extensions: 261243
Number of successful extensions: 780
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)