Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0210.Seq
         (797 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03730.1 68415.m00333 ACT domain-containing protein (ACR5) co...    29   3.6  
At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /...    28   6.2  
At1g15020.2 68414.m01795 thioredoxin family protein low similari...    28   6.2  
At1g15020.1 68414.m01794 thioredoxin family protein low similari...    28   6.2  
At5g28190.1 68418.m03413 hypothetical protein                          28   8.3  
At3g57780.1 68416.m06436 expressed protein                             28   8.3  

>At2g03730.1 68415.m00333 ACT domain-containing protein (ACR5)
           contains Pfam ACT domain PF01842
          Length = 456

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -2

Query: 112 RVLHQLVDQSRMPDTFEGFLDIEKDCGRVLARV 14
           R LHQL+   R  D +E  +D E  CGRV+  V
Sbjct: 227 RKLHQLMFADRDYDEWENNVDDEDKCGRVIPDV 259


>At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein contains Pfam
           PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
           CRAL/TRIO, N-terminus; similar to SEC14-like protein 2
           (Alpha-tocopherol associated protein) (TAP) (bTAP)
           (Fragment) (SP:P58875)  {Bos taurus}
          Length = 683

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 263 YTNDIPTLEGNLQAWEVDVKLALFADDSAYFSSSNVPSAAIL 388
           YT D+P  EG+  +WE+ V L       A F  SN  S  ++
Sbjct: 594 YTIDLPATEGSTLSWELRV-LGADVSYGAQFEPSNEASYTVI 634


>At1g15020.2 68414.m01795 thioredoxin family protein low similarity
           to FAD-dependent sulfhydryl oxidase-2 [Rattus
           norvegicus] GI:12483919; contains Pfam profiles PF00085:
           Thioredoxin, PF04777: Erv1 / Alr family
          Length = 528

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = +2

Query: 11  SNARQYTAAVFLDIEKAFERVWHAGLIHKLVQNTDLQHAYVR 136
           S+  Q + A+F DIE+A E  +   L HK +++++   +++R
Sbjct: 188 SDQEQISQAIF-DIEEATEEAFDIILAHKAIKSSETSASFIR 228


>At1g15020.1 68414.m01794 thioredoxin family protein low similarity
           to FAD-dependent sulfhydryl oxidase-2 [Rattus
           norvegicus] GI:12483919; contains Pfam profiles PF00085:
           Thioredoxin, PF04777: Erv1 / Alr family
          Length = 502

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = +2

Query: 11  SNARQYTAAVFLDIEKAFERVWHAGLIHKLVQNTDLQHAYVR 136
           S+  Q + A+F DIE+A E  +   L HK +++++   +++R
Sbjct: 188 SDQEQISQAIF-DIEEATEEAFDIILAHKAIKSSETSASFIR 228


>At5g28190.1 68418.m03413 hypothetical protein
          Length = 839

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
 Frame = -2

Query: 217 AVTGRTDDXAPXTASKKDLPSRYDPSSSHVGVLEVRVLHQLVDQSRMPDTFEG-FLDIEK 41
           AV  + DD     A  +D  S  DPS       +V  +  LVD     D F   F  ++ 
Sbjct: 96  AVANKIDDVNVFVAVVEDCDSHDDPSQDEGASFDVTKVDDLVDNVNPLDVFSNVFSPVDD 155

Query: 40  DC 35
            C
Sbjct: 156 GC 157


>At3g57780.1 68416.m06436 expressed protein
          Length = 670

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +1

Query: 295 PPSVGSRREVGAVCRRQRLLLVIQRPLCGHSEDAEAFGLTAPVAGPME 438
           PPS  +  EVG + R  R + +IQR   G++ D E   L +P+   +E
Sbjct: 586 PPSSTNVAEVGDISRMSRNVSMIQRK--GYTSDDELEELDSPLTSIIE 631


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,411,710
Number of Sequences: 28952
Number of extensions: 335477
Number of successful extensions: 903
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)