Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0108
(498 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 60 6e-10
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 60 6e-10
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 51 4e-07
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 51 5e-07
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 50 9e-07
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 47 6e-06
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 43 1e-04
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 42 3e-04
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 42 3e-04
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 41 5e-04
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 40 7e-04
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 40 0.001
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 39 0.002
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 39 0.002
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 37 0.007
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 36 0.015
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 36 0.020
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 36 0.020
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 36 0.020
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 36 0.020
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 36 0.020
At2g47310.1 68415.m05906 flowering time control protein-related ... 35 0.026
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 35 0.035
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 35 0.035
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 35 0.035
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 34 0.046
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 34 0.046
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 34 0.046
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 34 0.061
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 34 0.061
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 34 0.061
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 34 0.061
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 34 0.061
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 34 0.061
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 34 0.061
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 33 0.081
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 33 0.081
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 33 0.11
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 33 0.11
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 33 0.11
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 33 0.14
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 32 0.19
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 32 0.19
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 32 0.19
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 32 0.19
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 32 0.25
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 32 0.25
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 32 0.25
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 32 0.25
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 31 0.33
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 31 0.33
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 31 0.33
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 31 0.33
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 31 0.33
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 31 0.43
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 31 0.43
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 31 0.43
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 31 0.43
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 31 0.57
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 31 0.57
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 31 0.57
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 31 0.57
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 30 0.75
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 30 0.75
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 30 0.75
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 30 0.75
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 30 0.75
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 30 1.00
At1g47620.1 68414.m05289 cytochrome P450, putative similar to cy... 30 1.00
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 30 1.00
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 29 1.3
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 29 1.3
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 29 1.3
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 29 1.3
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 29 1.3
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 29 1.3
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 29 1.3
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 29 1.7
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 29 1.7
At3g09160.1 68416.m01082 RNA recognition motif (RRM)-containing ... 29 1.7
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 29 1.7
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 29 1.7
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 29 1.7
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 29 2.3
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 29 2.3
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 29 2.3
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 28 3.0
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 28 3.0
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 28 3.0
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 28 3.0
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 28 4.0
At5g03480.1 68418.m00304 expressed protein ; expression support... 28 4.0
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 27 5.3
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 27 5.3
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 27 5.3
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 27 7.0
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 27 7.0
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 27 7.0
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 27 7.0
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 27 7.0
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 27 7.0
At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing ... 27 9.3
At3g52250.1 68416.m05742 myb family transcription factor contain... 27 9.3
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 27 9.3
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 27 9.3
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 27 9.3
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 60.5 bits (140), Expect = 6e-10
Identities = 30/57 (52%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Frame = +1
Query: 88 YGRP-PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
+GR PP I SL V N+T+RTT +DL +F + G+V D++IPRDR T +SRGFA
Sbjct: 4 FGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60
Score = 31.1 bits (67), Expect = 0.43
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +3
Query: 279 DAXEALDTMDGRMXDGRELRVQMA 350
+A +A++ +DGR+ DGRE+ VQ A
Sbjct: 69 EAHKAVERLDGRVVDGREITVQFA 92
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 60.5 bits (140), Expect = 6e-10
Identities = 30/57 (52%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Frame = +1
Query: 88 YGRP-PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
+GR PP I SL V N+T+RTT +DL +F + G+V D++IPRDR T +SRGFA
Sbjct: 4 FGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60
Score = 31.1 bits (67), Expect = 0.43
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +3
Query: 279 DAXEALDTMDGRMXDGRELRVQMA 350
+A +A++ +DGR+ DGRE+ VQ A
Sbjct: 69 EAHKAVERLDGRVVDGREITVQFA 92
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 51.2 bits (117), Expect = 4e-07
Identities = 25/43 (58%), Positives = 29/43 (67%)
Frame = +1
Query: 124 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
SL V NL + EDLRR FE+ G V DIY+PRD YT + RGF
Sbjct: 38 SLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGF 80
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 50.8 bits (116), Expect = 5e-07
Identities = 24/44 (54%), Positives = 29/44 (65%)
Frame = +1
Query: 124 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
SL V N+ PE+LR FER G V D+YIPRD Y+ + RGFA
Sbjct: 48 SLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFA 91
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 50.0 bits (114), Expect = 9e-07
Identities = 24/43 (55%), Positives = 29/43 (67%)
Frame = +1
Query: 124 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
SL V NL + EDLR+ FE+ G V DIY+PRD YT + RGF
Sbjct: 37 SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGF 79
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 47.2 bits (107), Expect = 6e-06
Identities = 23/46 (50%), Positives = 27/46 (58%)
Frame = +1
Query: 115 GMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
G L + NL P DLR FER G + DIY+PR+ YT E RGF
Sbjct: 45 GPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGF 90
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 43.2 bits (97), Expect = 1e-04
Identities = 19/40 (47%), Positives = 27/40 (67%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V NLT+RTT +DLRR FE+ G+V D + + Y S+G+
Sbjct: 16 VGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGY 55
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 41.5 bits (93), Expect = 3e-04
Identities = 20/43 (46%), Positives = 28/43 (65%)
Frame = +1
Query: 124 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
SL V L++R T DL F + G+V D+++ D +TRESRGF
Sbjct: 46 SLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGF 88
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 41.5 bits (93), Expect = 3e-04
Identities = 20/43 (46%), Positives = 28/43 (65%)
Frame = +1
Query: 124 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
SL V L++R T DL F + G+V D+++ D +TRESRGF
Sbjct: 76 SLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGF 118
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 40.7 bits (91), Expect = 5e-04
Identities = 24/62 (38%), Positives = 33/62 (53%)
Frame = +1
Query: 103 PRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFSXVVT 282
P+ + +L V L+ RTT E LR F + GEV D + DR + S+GF GF T
Sbjct: 50 PQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGF---GFVRYAT 106
Query: 283 LK 288
L+
Sbjct: 107 LE 108
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 40.3 bits (90), Expect = 7e-04
Identities = 20/69 (28%), Positives = 37/69 (53%)
Frame = +1
Query: 79 KMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS 258
K S G P +DG + + NL + TT D+R++F C + + + +++ T E +G+A
Sbjct: 248 KTSSGFAPEMVDGYNRVYIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGEFKGYAH 306
Query: 259 *GFSXVVTL 285
F V++
Sbjct: 307 VDFKDSVSV 315
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/40 (50%), Positives = 23/40 (57%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V NL+ TT + LR F G V D + RDRYT SRGF
Sbjct: 7 VGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGF 46
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 38.7 bits (86), Expect = 0.002
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +1
Query: 163 EDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
++LR F +CGEV +++P DR T SRGFA
Sbjct: 497 KELRSHFSKCGEVTRVHVPTDRETGASRGFA 527
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 38.7 bits (86), Expect = 0.002
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = +1
Query: 124 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
+L V NL + T D+ +F G+V + + +DR+TR+SRG A
Sbjct: 58 TLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVA 101
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 37.1 bits (82), Expect = 0.007
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 88 YGRPPPRIDGMVS-LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
YGR P G+ + + V L + +DLR F R G + D YIP+D RGF
Sbjct: 228 YGRGEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGF 283
Score = 35.1 bits (77), Expect = 0.026
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1
Query: 166 DLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFS 270
D R FER GE+ D+Y+P+D +++ RG FS
Sbjct: 106 DFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFS 140
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 35.9 bits (79), Expect = 0.015
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
L + NL ++ P D++ VF G V D++IP++ T +GFA
Sbjct: 333 LIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFA 375
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 35.5 bits (78), Expect = 0.020
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = +1
Query: 124 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
S+ V N+ Y TPE++++ F+ CG V + I D++ + +GFA
Sbjct: 104 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFA 146
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 35.5 bits (78), Expect = 0.020
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V L + T EDL+R F + G+V D I DR + SRGF
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGF 49
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 35.5 bits (78), Expect = 0.020
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V L + T EDL+R F + G+V D I DR + SRGF
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGF 49
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 35.5 bits (78), Expect = 0.020
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V L + T EDL+R F + G+V D I DR + SRGF
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGF 49
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 35.5 bits (78), Expect = 0.020
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V L + T EDL+R F + G+V D I DR + SRGF
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGF 49
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 35.1 bits (77), Expect = 0.026
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 112 DGMVS-LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
DG ++ L V ++ T D+R+VFE+ G V +I +P+D+ T E +
Sbjct: 106 DGSIAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAY 153
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 34.7 bits (76), Expect = 0.035
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +1
Query: 85 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
SY R P + V L + T +++RR FE+ GE+ + I D+ T +S+G+
Sbjct: 5 SYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGY 60
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 34.7 bits (76), Expect = 0.035
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +1
Query: 85 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
SY R P + V L + T +++RR FE+ GE+ + I D+ T +S+G+
Sbjct: 5 SYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGY 60
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 34.7 bits (76), Expect = 0.035
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
V ++Y T LR F + GEV D I DR T SRGFA
Sbjct: 38 VGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFA 78
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 34.3 bits (75), Expect = 0.046
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
L + L++ TT + L F +CG+V + I DR + S+GF
Sbjct: 36 LFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGF 77
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 34.3 bits (75), Expect = 0.046
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
V + + T DL VF + GE+ D+ + RD+ T +S+GFA
Sbjct: 40 VGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFA 80
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 34.3 bits (75), Expect = 0.046
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +1
Query: 67 SILLKMSYGRPPPRIDG-MVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 243
S L S PP G L V L++RTT + LR FE+ G + + + D+
Sbjct: 58 SCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRP 117
Query: 244 RGFA 255
+GFA
Sbjct: 118 KGFA 121
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 33.9 bits (74), Expect = 0.061
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = +1
Query: 124 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
S+ V N+ Y TPE++++ F+ CG V + I D++ + +GFA
Sbjct: 93 SVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKF-GQPKGFA 135
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 33.9 bits (74), Expect = 0.061
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +1
Query: 124 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
S+ V N+ Y TPE+++ F+ CG V + I D++ + +GFA
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKF-GQPKGFA 132
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 33.9 bits (74), Expect = 0.061
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +1
Query: 124 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
S+ V N+ Y TPE+++ F+ CG V + I D++ + +GFA
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKF-GQPKGFA 132
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 33.9 bits (74), Expect = 0.061
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRG 249
L V +L + T +++ +F + G V D+Y+ RD Y R+SRG
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEY-RQSRG 252
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 33.9 bits (74), Expect = 0.061
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRG 249
L V +L + T +++ +F + G V D+Y+ RD Y R+SRG
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEY-RQSRG 252
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 33.9 bits (74), Expect = 0.061
Identities = 20/50 (40%), Positives = 26/50 (52%)
Frame = +1
Query: 103 PRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
P G L V NL + +DLR+VFE G V + +PRD T +GF
Sbjct: 279 PYSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDE-TGLCKGF 327
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 33.9 bits (74), Expect = 0.061
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Frame = +1
Query: 28 NIVLFNLFDLS*ISILLKMSYG-RPPPRIDGMV-----SLKVDNLTYRTTPEDLRRVFER 189
NI++ NL + LK+++ +P P + + L V NL++ T E L F
Sbjct: 140 NIIIDNLDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRE 199
Query: 190 CGEVGDIYIPRDRYTRESRGF 252
CG+V + D T SRG+
Sbjct: 200 CGDVVGARVVFDGDTGRSRGY 220
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 33.5 bits (73), Expect = 0.081
Identities = 18/53 (33%), Positives = 31/53 (58%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFSXVVTLKK 291
V +L + EDL++VF GEV ++ I ++ T++S+G A F+ V K+
Sbjct: 218 VGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKR 270
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 33.5 bits (73), Expect = 0.081
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V L+ TT E+ + FER G D+ + D T RGF
Sbjct: 124 VGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGF 163
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 33.1 bits (72), Expect = 0.11
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
+ V NL + T+ + L+R F GE+ ++ + +D + S+G+A
Sbjct: 42 IMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYA 84
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 33.1 bits (72), Expect = 0.11
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +1
Query: 124 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
S++V NL+ T DL +F G V +Y+ D+ T SRGF
Sbjct: 214 SVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGF 256
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 33.1 bits (72), Expect = 0.11
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +1
Query: 85 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
SY R P + V L + T +++RR F++ GE+ + I D+ T +S+G+
Sbjct: 5 SYYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGY 60
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 32.7 bits (71), Expect = 0.14
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +1
Query: 94 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
R P D + V NL + L R+F G+V D + DR T SRGF
Sbjct: 198 RQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGF 250
Score = 27.9 bits (59), Expect = 4.0
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFSXVVTLKK 291
L V NL Y + L +FE+ G V + +R T +SRGF GF + T+++
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGF---GFVTMSTVEE 166
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 32.3 bits (70), Expect = 0.19
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
L + + Y + LR F + GEV D + DR T SRGF
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGF 83
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 32.3 bits (70), Expect = 0.19
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
+ N+++ TT E L +F R GE+ I + D+ T+ GF
Sbjct: 38 IGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGF 77
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 32.3 bits (70), Expect = 0.19
Identities = 14/43 (32%), Positives = 27/43 (62%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
L + L++ T+ + LR FE GE+ ++ I D+ ++ S+G+A
Sbjct: 284 LFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYA 326
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 32.3 bits (70), Expect = 0.19
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 169 LRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFS 270
LR F CGE+ ++ +P DR T S+G A FS
Sbjct: 421 LREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFS 454
Score = 28.7 bits (61), Expect = 2.3
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +1
Query: 103 PRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
P G +L NL++ D+ F+ GEV D+ +R RGF
Sbjct: 291 PAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGF 340
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 31.9 bits (69), Expect = 0.25
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +1
Query: 109 IDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
+D + V L TT + + F + GE+ D I +DR T + RGF
Sbjct: 38 VDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGF 85
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 31.9 bits (69), Expect = 0.25
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFS 270
L V L++ T L++ F GEV + + DR T SRGF FS
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS 84
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 31.9 bits (69), Expect = 0.25
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFS 270
L V L++ T L++ F GEV + + DR T SRGF FS
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS 84
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 31.9 bits (69), Expect = 0.25
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFSXVVTLKK 291
L V +++ TT E F + GEV D I DR T RGF F+ +K
Sbjct: 68 LFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEK 122
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 31.5 bits (68), Expect = 0.33
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
L + +++ T E LR F G+V + I RDR T +RGF
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGF 49
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 31.5 bits (68), Expect = 0.33
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
L + +++ T E LR F G+V + I RDR T +RGF
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGF 49
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 31.5 bits (68), Expect = 0.33
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
L + +++ T E LR F G+V + I RDR T +RGF
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGF 49
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 31.5 bits (68), Expect = 0.33
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
+ N+ R + L + + G V D++IPRD+ T + +GFA
Sbjct: 11 IGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFA 51
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 31.5 bits (68), Expect = 0.33
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +1
Query: 118 MVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
+ + V L + T + +RR FE+ GE+ + + D+ T S+G+
Sbjct: 21 LTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGY 65
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 31.1 bits (67), Expect = 0.43
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
L + +++ T+ + LR F GEV + I +DR T +RGF
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGF 49
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 31.1 bits (67), Expect = 0.43
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
L + +++ T+ + LR F GEV + I +DR T +RGF
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGF 49
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 31.1 bits (67), Expect = 0.43
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
L V +++ T + LR F GEV + RD+ T RGF
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGF 49
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 31.1 bits (67), Expect = 0.43
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRG 249
L N+ + +TPED+R +FE+ G V DI + + R +RG
Sbjct: 96 LIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKER-NRG 135
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 30.7 bits (66), Expect = 0.57
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFSXVVTLK 288
L V NL + + LR++FE G V + +P D T + +GF GF V L+
Sbjct: 267 LYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGF---GFIQFVQLE 317
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 30.7 bits (66), Expect = 0.57
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 121 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
+ L V NL++ L ++FE G V + + D+ T SRGF
Sbjct: 99 LKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGF 142
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 30.7 bits (66), Expect = 0.57
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 121 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
+ L V NL++ L ++FE G V + + D+ T SRGF
Sbjct: 99 LKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGF 142
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 30.7 bits (66), Expect = 0.57
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V L + T E LR+ FE+ GE+ + + D+ T S+G+
Sbjct: 28 VGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGY 67
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 30.3 bits (65), Expect = 0.75
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 85 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIP 219
+Y PP ++ V NL T E+L++ F + GEV + IP
Sbjct: 225 AYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIP 269
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 30.3 bits (65), Expect = 0.75
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = +1
Query: 163 EDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
EDLR + E GE+ ++ + +DR + +S+G+A
Sbjct: 130 EDLRDLCEEIGEIFEVRLMKDRDSGDSKGYA 160
Score = 29.9 bits (64), Expect = 1.00
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 124 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
+L V N+ T+ E L+ +F+R GEV I P + + GF
Sbjct: 293 ALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGF 335
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 30.3 bits (65), Expect = 0.75
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
L + +++ T E L+ F GEV + I +DR T +RGF
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGF 49
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V L T D + FE+ G D+ + D T+ RGF
Sbjct: 112 VGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGF 151
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 30.3 bits (65), Expect = 0.75
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
L + +++ T E L+ F GEV + I +DR T +RGF
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGF 49
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V L T D + FE+ G D+ + D T+ RGF
Sbjct: 112 VGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGF 151
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 30.3 bits (65), Expect = 0.75
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V L + T + + R F GEV D I DR T S+GF
Sbjct: 48 VGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGF 87
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 29.9 bits (64), Expect = 1.00
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 121 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
+ L V NL + L ++FE G V + + D+ T SRGF
Sbjct: 91 LKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGF 134
>At1g47620.1 68414.m05289 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 520
Score = 29.9 bits (64), Expect = 1.00
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +2
Query: 119 WSR*K*IILPTERR-LKTYAAFSKGAEKLVISTFPEIGTQG 238
W K I + TE++ LK +A F + EK++ + E+G+QG
Sbjct: 235 WKLQKWIGIGTEKKMLKAHATFDRVCEKIIAAKREELGSQG 275
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 29.9 bits (64), Expect = 1.00
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V L + T E LRR F++ G++ + + D+ T S+G+
Sbjct: 28 VGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGY 67
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
L + +++ T E L+ F + G++ + I RDR T +RGF
Sbjct: 17 LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGF 58
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 29.5 bits (63), Expect = 1.3
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFS 270
L + L++ T LR F G+V D + DR T SRGF F+
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFN 84
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 29.5 bits (63), Expect = 1.3
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFS 270
L + L++ T LR F G+V D + DR T SRGF F+
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFN 84
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 29.5 bits (63), Expect = 1.3
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
L V L E LR F + + D+ + RD++T SRGFA
Sbjct: 460 LVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFA 502
Score = 28.3 bits (60), Expect = 3.0
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFSXV 276
V L+ ++T EDL ++ G + + + R++ + SRGFA F V
Sbjct: 302 VKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTV 349
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 154 TTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
TT + F + GE+ D I RDR+T + RGF
Sbjct: 30 TTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGF 62
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 154 TTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
TT + F + GE+ D I RDR+T + RGF
Sbjct: 30 TTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGF 62
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V L + TT E+L+ FE GE+ + + D+ T ++GF
Sbjct: 167 VRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGF 206
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 29.1 bits (62), Expect = 1.7
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
L V NL Y + L +FE+ G V + +R T +SRGF
Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGF 193
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
+ L + T+ LR FE+ G + + + D+++ SRGF
Sbjct: 11 IGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGF 50
>At3g09160.1 68416.m01082 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif (aka RRM, RBD, or RNP domain)
Length = 198
Score = 29.1 bits (62), Expect = 1.7
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +1
Query: 166 DLRRVFERCGEVGDIYIPRDR 228
+L+++F CGE+ D++IP R
Sbjct: 42 ELKKLFSPCGEITDVHIPETR 62
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 29.1 bits (62), Expect = 1.7
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V L + TT E L VFE GE+ + + D+ T +++GF
Sbjct: 108 VYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGF 147
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 29.1 bits (62), Expect = 1.7
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V L + TT E L VFE GE+ + + D+ T +++GF
Sbjct: 108 VYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGF 147
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 29.1 bits (62), Expect = 1.7
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +1
Query: 85 SYGRPPPR--IDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
S GRP P+ ++G + L V + T ED+ F GE+ ++ + DR + +G+A
Sbjct: 82 SDGRPGPQRSVEGWIIL-VSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYA 139
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 28.7 bits (61), Expect = 2.3
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +1
Query: 91 GRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
GR I+ L + NL Y ED++ +F GE+ + DR R S+G A
Sbjct: 76 GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGR-SKGTA 129
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 28.7 bits (61), Expect = 2.3
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +1
Query: 91 GRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
GR I+ L + NL Y ED++ +F GE+ + DR R S+G A
Sbjct: 12 GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGR-SKGTA 65
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 28.7 bits (61), Expect = 2.3
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +1
Query: 91 GRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
GR I+ L + NL Y ED++ +F GE+ + DR R S+G A
Sbjct: 78 GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGR-SKGTA 131
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 28.3 bits (60), Expect = 3.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
L + L++ + L+ F GEV ++ I D+ + SRGF
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGF 84
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 28.3 bits (60), Expect = 3.0
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFS 270
L + +++ T LR F GEV + + R++ T RGF FS
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFS 55
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 28.3 bits (60), Expect = 3.0
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V L + T L F + G+V D I DR T SRGF
Sbjct: 12 VGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGF 51
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 28.3 bits (60), Expect = 3.0
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V L + T L F + G+V D I DR T SRGF
Sbjct: 12 VGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGF 51
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 243
L V NL T ED+R +F GEV I D+ R S
Sbjct: 95 LHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPS 133
>At5g03480.1 68418.m00304 expressed protein ; expression supported
by MPSS
Length = 321
Score = 27.9 bits (59), Expect = 4.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 169 LRRVFERCGEVGDIYIPRD 225
L + F CGE+ IY+PRD
Sbjct: 44 LTKHFASCGEITQIYVPRD 62
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V L + T E L F+R GE+ + + DR T S+G+
Sbjct: 17 VGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGY 56
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +3
Query: 279 DAXEALDTMDGRMXDGRELRVQMA 350
DA +AL ++DG++ DGR + V++A
Sbjct: 60 DARKALKSLDGKIVDGRLIFVEVA 83
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 109 IDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
++G + V L Y T +R + E G + + +DR T S+G+A
Sbjct: 371 LEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYA 419
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 109 IDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
++G + V L Y T +R + E G + + +DR T S+G+A
Sbjct: 355 LEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYA 403
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 109 IDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
++G + V L Y T +R + E G + + +DR T S+G+A
Sbjct: 355 LEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYA 403
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 109 IDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
++G + V L Y T +R + E G + + +DR T S+G+A
Sbjct: 355 LEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYA 403
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V L + T E +++ FE+ GE+ + + D+ + S+G+
Sbjct: 17 VGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGY 56
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V L + T E +++ FE+ GE+ + + D+ + S+G+
Sbjct: 17 VGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGY 56
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V L + T E +++ FE+ GE+ + + D+ + S+G+
Sbjct: 17 VGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGY 56
>At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing
protein contains Pfam domain PF00076: RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 461
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 169 LRRVFERCGEVGDIYIPRDRYTRESRGF 252
L + F CGE+ +++PR+ T +GF
Sbjct: 364 LSKHFSVCGEITRVFVPRNPSTGAIKGF 391
>At3g52250.1 68416.m05742 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 1677
Score = 26.6 bits (56), Expect = 9.3
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Frame = +1
Query: 76 LKMSYGRPPPRIDGMVSLKVDNLTYR--TTPEDLRRVFERCGEVGDIYIPRDRYTRESRG 249
LK ++ PRI + + N + + ED E CGE G I+ D + +G
Sbjct: 1063 LKFNHVVKKPRISHTLHNENSNTLHNENSNEEDDSCSEESCGETGPIHWTDDERSAFIQG 1122
Query: 250 FAS*GFSXVVTLKKPWTRWTDEC 318
F+ G + + TR D+C
Sbjct: 1123 FSLFGKNFASISRYVGTRSPDQC 1145
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFSXVVTLKK 291
V N++ P+ L F R GE+ + + D+ T +GFA + + + KK
Sbjct: 231 VSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKK 283
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +1
Query: 124 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFS 270
+L V +++ +T E L + F + G+V + + D+ +GFA FS
Sbjct: 22 TLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFS 70
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 234
V L + + E L +F + G V ++Y+P+DR T
Sbjct: 29 VGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVT 62
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,932,993
Number of Sequences: 28952
Number of extensions: 163045
Number of successful extensions: 533
Number of sequences better than 10.0: 106
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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