BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= tesS0005 (698 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g68200.1 68414.m07791 zinc finger (CCCH-type) family protein ... 71 6e-13 At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein ... 71 6e-13 At2g35430.1 68415.m04342 zinc finger (CCCH-type) family protein ... 44 3e-05 At1g32360.1 68414.m03989 zinc finger (CCCH-type) family protein ... 44 1e-04 At5g06770.1 68418.m00765 KH domain-containing protein / zinc fin... 42 4e-04 At3g19360.1 68416.m02456 zinc finger (CCCH-type) family protein ... 40 0.002 At3g12130.1 68416.m01509 KH domain-containing protein / zinc fin... 39 0.003 At1g03790.1 68414.m00360 zinc finger (CCCH-type) family protein ... 37 0.015 At5g56900.2 68418.m07101 CwfJ-like family protein / zinc finger ... 34 0.079 At5g56900.1 68418.m07100 CwfJ-like family protein / zinc finger ... 34 0.079 At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein ... 34 0.10 At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING ... 34 0.10 At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING ... 34 0.10 At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING ... 34 0.10 At3g21810.1 68416.m02750 zinc finger (CCCH-type) family protein ... 33 0.24 At1g04990.2 68414.m00500 zinc finger (CCCH-type) family protein ... 33 0.24 At1g04990.1 68414.m00499 zinc finger (CCCH-type) family protein ... 33 0.24 At2g28450.1 68415.m03456 zinc finger (CCCH-type) family protein ... 31 0.56 At2g46250.1 68415.m05751 myosin heavy chain-related contains wea... 31 0.73 At5g57790.1 68418.m08529 expressed protein 31 0.97 At1g75340.1 68414.m08751 zinc finger (CCCH-type) family protein ... 30 1.3 At5g04390.1 68418.m00431 zinc finger (C2H2 type) family protein ... 29 2.2 At3g55980.1 68416.m06220 zinc finger (CCCH-type) family protein ... 29 2.2 At2g40140.1 68415.m04937 zinc finger (CCCH-type) family protein ... 29 2.2 At1g72040.1 68414.m08327 deoxynucleoside kinase family contains ... 29 2.2 At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein ... 29 3.0 At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1 pro... 29 3.9 At1g30460.1 68414.m03723 zinc finger (CCCH-type) family protein ... 29 3.9 At1g01110.1 68414.m00014 expressed protein contains Prosite PS00... 29 3.9 At5g07500.1 68418.m00858 zinc finger (CCCH-type) family protein ... 28 5.2 At4g34350.1 68417.m04881 LytB family protein contains Pfam profi... 28 5.2 At3g53330.1 68416.m05884 plastocyanin-like domain-containing pro... 28 5.2 At3g48440.1 68416.m05288 zinc finger (CCCH-type) family protein ... 28 5.2 At2g32930.1 68415.m04037 zinc finger (CCCH-type) family protein ... 28 5.2 At5g19800.1 68418.m02353 hydroxyproline-rich glycoprotein family... 28 6.8 At4g29190.1 68417.m04176 zinc finger (CCCH-type) family protein ... 28 6.8 At1g59720.1 68414.m06720 pentatricopeptide (PPR) repeat-containi... 28 6.8 At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein ... 27 9.0 At3g52980.1 68416.m05840 RNA recognition motif (RRM)-containing ... 27 9.0 At2g45250.1 68415.m05633 expressed protein 27 9.0 At1g62950.1 68414.m07108 leucine-rich repeat transmembrane prote... 27 9.0 >At1g68200.1 68414.m07791 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) Length = 308 Score = 71.3 bits (167), Expect = 6e-13 Identities = 28/50 (56%), Positives = 36/50 (72%) Frame = +1 Query: 256 CQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVHNAEEARR 405 CQFAHG++ELR + RHP+YKTE+CR + CPYG RCHF H+ E + Sbjct: 243 CQFAHGIKELRPVIRHPRYKTEVCRMVLAGDNCPYGHRCHFRHSLSEQEK 292 Score = 41.1 bits (92), Expect = 7e-04 Identities = 15/30 (50%), Positives = 17/30 (56%) Frame = +1 Query: 313 KTELCRTFHSVGFCPYGPRCHFVHNAEEAR 402 KTELC + G CPYG C F H +E R Sbjct: 224 KTELCNKWQETGTCPYGDHCQFAHGIKELR 253 Score = 31.9 bits (69), Expect = 0.42 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = +2 Query: 200 KTELCRPFEEAGVCKYGDN 256 KTELC ++E G C YGD+ Sbjct: 224 KTELCNKWQETGTCPYGDH 242 >At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) Length = 310 Score = 71.3 bits (167), Expect = 6e-13 Identities = 28/50 (56%), Positives = 35/50 (70%) Frame = +1 Query: 256 CQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVHNAEEARR 405 CQFAHG+ ELR + RHP+YKTE+CR + CPYG RCHF H+ + R Sbjct: 253 CQFAHGIDELRPVIRHPRYKTEVCRMMVTGAMCPYGHRCHFRHSLTDQER 302 Score = 39.5 bits (88), Expect = 0.002 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 2/46 (4%) Frame = +1 Query: 271 GVRELRNLQ--RHPKYKTELCRTFHSVGFCPYGPRCHFVHNAEEAR 402 G RE L+ R KTELC + G C YG C F H +E R Sbjct: 218 GEREALELEVYRQGMMKTELCNKWQETGACCYGDNCQFAHGIDELR 263 Score = 33.1 bits (72), Expect = 0.18 Identities = 12/19 (63%), Positives = 14/19 (73%) Frame = +2 Query: 200 KTELCRPFEEAGVCKYGDN 256 KTELC ++E G C YGDN Sbjct: 234 KTELCNKWQETGACCYGDN 252 >At2g35430.1 68415.m04342 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) Length = 252 Score = 44.4 bits (100), Expect(2) = 3e-05 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +1 Query: 298 RHPKYKTELCRTFHSVGFCPYGPRCHFVHNAEE 396 + P +KT +C + + G+CP+G CHF H E Sbjct: 140 KSPNWKTRICNKWQTTGYCPFGSHCHFAHGPSE 172 Score = 37.5 bits (83), Expect = 0.008 Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%) Frame = +1 Query: 310 YKTELCRTFHSVGFCPYGPR-CHFVHNAEEAR 402 +KT+LC F + G CPY CHF H+AEE R Sbjct: 72 FKTKLCFKFRA-GTCPYSASSCHFAHSAEELR 102 Score = 20.6 bits (41), Expect(2) = 3e-05 Identities = 7/11 (63%), Positives = 7/11 (63%) Frame = +1 Query: 256 CQFAHGVRELR 288 C FAH ELR Sbjct: 92 CHFAHSAEELR 102 >At1g32360.1 68414.m03989 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) Length = 384 Score = 44.0 bits (99), Expect = 1e-04 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = +1 Query: 310 YKTELCRTFHSVGFCPYGPRCHFVHNAEEARR 405 +KT +C + G+CP+G +CHF H A E R Sbjct: 261 WKTRICNKWEITGYCPFGAKCHFAHGAAELHR 292 Score = 37.9 bits (84), Expect = 0.006 Identities = 16/32 (50%), Positives = 20/32 (62%) Frame = +1 Query: 310 YKTELCRTFHSVGFCPYGPRCHFVHNAEEARR 405 +KT+LC F + G CPY C+F H EE RR Sbjct: 92 FKTKLCCKFRA-GTCPYITNCNFAHTVEELRR 122 Score = 33.9 bits (74), Expect = 0.10 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = +1 Query: 310 YKTELCRTFHSVGFCPYGPRCHFVHNAEEARRRE 411 +K C+ F++ CPYG C F+H+ E +R RE Sbjct: 173 FKGRHCKKFYTEEGCPYGESCTFLHD-EASRNRE 205 >At5g06770.1 68418.m00765 KH domain-containing protein / zinc finger (CCCH type) family protein contains Pfam domains PF00013: KH domain and PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) Length = 240 Score = 41.9 bits (94), Expect = 4e-04 Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 2/37 (5%) Frame = +1 Query: 301 HP--KYKTELCRTFHSVGFCPYGPRCHFVHNAEEARR 405 HP YKT++C + S G C YG RCHF H E RR Sbjct: 201 HPGSNYKTKICDRY-SKGNCTYGDRCHFAHGESELRR 236 Score = 35.1 bits (77), Expect = 0.045 Identities = 13/41 (31%), Positives = 21/41 (51%) Frame = +1 Query: 262 FAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVH 384 F +E+ ++ K++ C F S CP+G CHF+H Sbjct: 21 FKRSKQEMESISTGLGSKSKPCTKFFSTSGCPFGDNCHFLH 61 >At3g19360.1 68416.m02456 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) Length = 386 Score = 39.9 bits (89), Expect = 0.002 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = +1 Query: 310 YKTELCRTFHSVGFCPYGPRCHFVHNAEE 396 +KT LC F G CP+G +CHF H E Sbjct: 270 WKTRLCMKFDITGQCPFGDKCHFAHGQAE 298 Score = 33.1 bits (72), Expect = 0.18 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = +1 Query: 313 KTELCRTFHSVGFCPYGPRCHFVH 384 + +LCR F CPYG RC+F+H Sbjct: 185 RMKLCRKFCFGEECPYGDRCNFIH 208 Score = 31.9 bits (69), Expect = 0.42 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +1 Query: 310 YKTELCRTFHSVGFCPYGPRCHFVHNAEEARR 405 YKT +C F + G C G C+F H E+ R+ Sbjct: 105 YKTRMCAKFRA-GTCRNGELCNFAHGIEDLRQ 135 >At3g12130.1 68416.m01509 KH domain-containing protein / zinc finger (CCCH type) family protein Length = 248 Score = 39.1 bits (87), Expect = 0.003 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%) Frame = +1 Query: 301 HP--KYKTELCRTFHSVGFCPYGPRCHFVHNAEEARR 405 HP +KT++C F S G C +G RCHF H E R+ Sbjct: 209 HPGSNFKTKICERF-SKGNCTFGDRCHFAHGEAELRK 244 Score = 33.5 bits (73), Expect = 0.14 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = +1 Query: 313 KTELCRTFHSVGFCPYGPRCHFVH 384 K++ C F S CP+G CHF+H Sbjct: 38 KSKPCTKFFSTSGCPFGENCHFLH 61 >At1g03790.1 68414.m00360 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) Length = 393 Score = 36.7 bits (81), Expect = 0.015 Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 1/51 (1%) Frame = +1 Query: 247 WG*CQFAH-GVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVHNAEE 396 W C FAH G + R R +Y E+C F G C G C F H E Sbjct: 101 WTDCPFAHPGEKARRRDPRRFQYSGEVCPEFRRGGDCSRGDDCEFAHGVFE 151 >At5g56900.2 68418.m07101 CwfJ-like family protein / zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar), PF04677: Protein similar to CwfJ C-terminus 1, PF04676: Protein similar to CwfJ C-terminus 2 Length = 593 Score = 34.3 bits (75), Expect = 0.079 Identities = 14/25 (56%), Positives = 15/25 (60%) Frame = +1 Query: 319 ELCRTFHSVGFCPYGPRCHFVHNAE 393 +LC F G CP G CHF HNAE Sbjct: 304 KLCFKFVCSGSCPRGEDCHFQHNAE 328 >At5g56900.1 68418.m07100 CwfJ-like family protein / zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar), PF04677: Protein similar to CwfJ C-terminus 1, PF04676: Protein similar to CwfJ C-terminus 2 Length = 404 Score = 34.3 bits (75), Expect = 0.079 Identities = 14/25 (56%), Positives = 15/25 (60%) Frame = +1 Query: 319 ELCRTFHSVGFCPYGPRCHFVHNAE 393 +LC F G CP G CHF HNAE Sbjct: 115 KLCFKFVCSGSCPRGEDCHFQHNAE 139 >At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) Length = 381 Score = 33.9 bits (74), Expect = 0.10 Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 1/51 (1%) Frame = +1 Query: 247 WG*CQFAH-GVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVHNAEE 396 W C F+H G + R R Y E+C F G C G C F H E Sbjct: 79 WTDCPFSHPGEKARRRDPRRFHYTGEVCPEFSRHGDCSRGDECGFAHGVFE 129 >At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING finger) family protein contains Pfam domains PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) and PF00097: Zinc finger, C3HC4 type (RING finger) Length = 378 Score = 33.9 bits (74), Expect = 0.10 Identities = 9/26 (34%), Positives = 17/26 (65%) Frame = +1 Query: 310 YKTELCRTFHSVGFCPYGPRCHFVHN 387 Y+ ++C+ + G+C YG C F+H+ Sbjct: 236 YQPDICKDYKETGYCGYGDSCKFLHD 261 Score = 31.9 bits (69), Expect = 0.42 Identities = 10/30 (33%), Positives = 18/30 (60%) Frame = +2 Query: 197 YKTELCRPFEEAGVCKYGDNANLLTASANY 286 Y+ ++C+ ++E G C YGD+ L +Y Sbjct: 236 YQPDICKDYKETGYCGYGDSCKFLHDRGDY 265 >At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING finger) family protein contains Pfam domains PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) and PF00097: Zinc finger, C3HC4 type (RING finger) Length = 378 Score = 33.9 bits (74), Expect = 0.10 Identities = 9/26 (34%), Positives = 17/26 (65%) Frame = +1 Query: 310 YKTELCRTFHSVGFCPYGPRCHFVHN 387 Y+ ++C+ + G+C YG C F+H+ Sbjct: 236 YQPDICKDYKETGYCGYGDSCKFLHD 261 Score = 31.9 bits (69), Expect = 0.42 Identities = 10/30 (33%), Positives = 18/30 (60%) Frame = +2 Query: 197 YKTELCRPFEEAGVCKYGDNANLLTASANY 286 Y+ ++C+ ++E G C YGD+ L +Y Sbjct: 236 YQPDICKDYKETGYCGYGDSCKFLHDRGDY 265 >At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING finger) family protein similar to SP|O15541 Zinc finger protein 183 {Homo sapiens}; contains Pfam profiles PF04396: Protein of unknown function, DUF537, PF00097: Zinc finger, C3HC4 type (RING finger), PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) Length = 586 Score = 33.9 bits (74), Expect = 0.10 Identities = 9/26 (34%), Positives = 17/26 (65%) Frame = +1 Query: 310 YKTELCRTFHSVGFCPYGPRCHFVHN 387 Y+ ++C+ + G+C YG C F+H+ Sbjct: 201 YQPDICKDYKETGYCGYGDSCKFLHD 226 Score = 31.9 bits (69), Expect = 0.42 Identities = 10/30 (33%), Positives = 18/30 (60%) Frame = +2 Query: 197 YKTELCRPFEEAGVCKYGDNANLLTASANY 286 Y+ ++C+ ++E G C YGD+ L +Y Sbjct: 201 YQPDICKDYKETGYCGYGDSCKFLHDRGDY 230 >At3g21810.1 68416.m02750 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) Length = 437 Score = 32.7 bits (71), Expect = 0.24 Identities = 15/32 (46%), Positives = 17/32 (53%) Frame = +1 Query: 310 YKTELCRTFHSVGFCPYGPRCHFVHNAEEARR 405 YKT+LC F+ G C P C F H E RR Sbjct: 7 YKTKLCILFNKTGDCS-RPNCTFAHGNAELRR 37 >At1g04990.2 68414.m00500 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) Length = 404 Score = 32.7 bits (71), Expect = 0.24 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = +1 Query: 325 CRTFHSVGFCPYGPRCHFVH 384 C F S GFC +GP C F H Sbjct: 313 CGNFRSYGFCKFGPNCKFDH 332 >At1g04990.1 68414.m00499 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) Length = 404 Score = 32.7 bits (71), Expect = 0.24 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = +1 Query: 325 CRTFHSVGFCPYGPRCHFVH 384 C F S GFC +GP C F H Sbjct: 313 CGNFRSYGFCKFGPNCKFDH 332 >At2g28450.1 68415.m03456 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) Length = 809 Score = 31.5 bits (68), Expect = 0.56 Identities = 12/35 (34%), Positives = 16/35 (45%) Frame = +1 Query: 304 PKYKTELCRTFHSVGFCPYGPRCHFVHNAEEARRR 408 P +KT LC F C +G C + H E R + Sbjct: 78 PWWKTSLCSYFRREASCSHGNECKYAHGEAELRMK 112 >At2g46250.1 68415.m05751 myosin heavy chain-related contains weak similarity to Myosin heavy chain, muscle (Swiss-Prot:P05661) [Drosophila melanogaster] Length = 468 Score = 31.1 bits (67), Expect = 0.73 Identities = 19/63 (30%), Positives = 32/63 (50%) Frame = +2 Query: 365 RVAISCITQRKQDAENHRRQEVHWHRSHRADLWRRI*ATGRDRHARRISIDASLSTCDVA 544 R+ + +R D E+H R +H H RA L R+I AT R+ + S ++C + Sbjct: 73 RIELRRCRRRDSDVESHSRSPLHDHPPSRASLRRQIAATDDYRNGDLLQ-PISPASCSSS 131 Query: 545 TST 553 +S+ Sbjct: 132 SSS 134 >At5g57790.1 68418.m08529 expressed protein Length = 205 Score = 30.7 bits (66), Expect = 0.97 Identities = 13/43 (30%), Positives = 23/43 (53%) Frame = +3 Query: 147 SNAPPVNRLLRHQPQVATRPSSADRLKKRGFVNMGIMPICSRR 275 SN PP+ + P ++PS+ D + GF ++GI + +R Sbjct: 43 SNFPPLTTEIDTPPPSNSKPSTVDDISMEGFESLGIEKLIKKR 85 >At1g75340.1 68414.m08751 zinc finger (CCCH-type) family protein weak similarity to Nucleoporin NUP42 (Nuclear pore protein NUP42) (Swiss-Prot:P49686) [Saccharomyces cerevisiae]; contains Pfam profile PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) Length = 435 Score = 30.3 bits (65), Expect = 1.3 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = +1 Query: 313 KTELCRTFHSVGFCPYGPRCHFVH 384 + ELCR F G C YG C F+H Sbjct: 2 RKELCRNFQR-GSCRYGENCRFLH 24 Score = 27.9 bits (59), Expect = 6.8 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +2 Query: 200 KTELCRPFEEAGVCKYGDNANLL 268 + ELCR F+ G C+YG+N L Sbjct: 2 RKELCRNFQR-GSCRYGENCRFL 23 >At5g04390.1 68418.m00431 zinc finger (C2H2 type) family protein contains Pfam domain, PF00096: Zinc finger, C2H2 type Length = 362 Score = 29.5 bits (63), Expect = 2.2 Identities = 12/35 (34%), Positives = 17/35 (48%) Frame = +2 Query: 515 DASLSTCDVATSTGHSFRFSPHELPRSGRRPTARF 619 D ++ C + + GHS + H LP S T RF Sbjct: 97 DQDIANCLILLAQGHSLPHNNHHLPNSNNNNTYRF 131 >At3g55980.1 68416.m06220 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) and Pfam domain, PF00023: Ankyrin repeat Length = 580 Score = 29.5 bits (63), Expect = 2.2 Identities = 17/52 (32%), Positives = 19/52 (36%), Gaps = 1/52 (1%) Frame = +1 Query: 247 WG*CQFAH-GVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVHNAEEA 399 W C F H G R R Y C F G CP G C + H E+ Sbjct: 230 WTECAFVHPGENARRRDPRKYPYTCVPCPEFRK-GSCPKGDSCEYAHGVFES 280 >At2g40140.1 68415.m04937 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) and Pfam domain, PF00023: Ankyrin repeat Length = 597 Score = 29.5 bits (63), Expect = 2.2 Identities = 17/52 (32%), Positives = 19/52 (36%), Gaps = 1/52 (1%) Frame = +1 Query: 247 WG*CQFAH-GVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVHNAEEA 399 W C F H G R R Y C F G CP G C + H E+ Sbjct: 233 WTECPFVHPGENARRRDPRKYPYTCVPCPEFRK-GSCPKGDSCEYAHGVFES 283 >At1g72040.1 68414.m08327 deoxynucleoside kinase family contains Pfam profile: PF01712 deoxynucleoside kinase Length = 580 Score = 29.5 bits (63), Expect = 2.2 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = -2 Query: 658 DERDRREPMKSRLKTGSRSSSGSGEFV 578 DE + ++ R+ +RSSSGSGEFV Sbjct: 149 DEDEEKDEKPVRMNRRNRSSSGSGEFV 175 >At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 536 Score = 29.1 bits (62), Expect = 3.0 Identities = 11/37 (29%), Positives = 19/37 (51%) Frame = +1 Query: 274 VRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVH 384 +R R P++ ++C F+ GFC +G C + H Sbjct: 145 LRTSRRSPSLPEFPVKICHYFNK-GFCKHGNNCRYFH 180 >At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1 protein (ZFWD1) identical to zfwd1 protein (GI:12057164) [Arabidopsis thaliana] Length = 430 Score = 28.7 bits (61), Expect = 3.9 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = +1 Query: 313 KTELCRTFHSVGFCPYGPRCHFVH 384 KTE F G CPYG +C ++H Sbjct: 103 KTEKLCKFWVDGNCPYGDKCRYLH 126 >At1g30460.1 68414.m03723 zinc finger (CCCH-type) family protein / YT521-B-like family protein low similarity to cleavage and polyadenylation specificity factor 30 kDa subunit [Bos taurus] GI:2327052; contains Pfam profiles PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar), PF04146: YT521-B-like family; supporting cDNA gi|24415581|gb|AY140901.1| Length = 678 Score = 28.7 bits (61), Expect = 3.9 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = +1 Query: 277 RELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVH 384 RE + +H + C + +GFCP GP C + H Sbjct: 104 REQDCVYKHTNEDIKECNMY-KLGFCPNGPDCRYRH 138 >At1g01110.1 68414.m00014 expressed protein contains Prosite PS00165: Serine/threonine dehydratases pyridoxal-phosphate attachment site Length = 364 Score = 28.7 bits (61), Expect = 3.9 Identities = 23/92 (25%), Positives = 35/92 (38%) Frame = +2 Query: 386 TQRKQDAENHRRQEVHWHRSHRADLWRRI*ATGRDRHARRISIDASLSTCDVATSTGHSF 565 T Q E H E+ R D W + R + R S+D +S V T + Sbjct: 105 TVGNQSTEGHHEVELEEERPKWLDRWMATRPWDK-RASSRASVDQRVSVKTVEIDTSQPY 163 Query: 566 RFSPHELPRSGRRPTARF*PTFHRLSAISFIA 661 + P G+RP++ + H S +F A Sbjct: 164 SRTGAGSPSRGQRPSSPSRTSHHYQSRNNFSA 195 >At5g07500.1 68418.m00858 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) Length = 245 Score = 28.3 bits (60), Expect = 5.2 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Frame = +1 Query: 256 CQFAHGVRELRNLQRHP-KYKTELCRTFHSVGFCPYGPRCHFVHNAEEARRRE 411 C+FAHGV E HP +Y+T C + G C F H E+ R+ E Sbjct: 112 CEFAHGVFE---YWLHPARYRTRAC----NAGNLCQRKVCFFAHAPEQLRQSE 157 >At4g34350.1 68417.m04881 LytB family protein contains Pfam profile: PF02401 LytB protein Length = 466 Score = 28.3 bits (60), Expect = 5.2 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = -2 Query: 598 SGSGEFVRRKAKAVACAGGD 539 SGSG RRKA +V C+ GD Sbjct: 24 SGSGSLRRRKALSVRCSSGD 43 >At3g53330.1 68416.m05884 plastocyanin-like domain-containing protein similar to mavicyanin SP:P80728 from [Cucurbita pepo] Length = 310 Score = 28.3 bits (60), Expect = 5.2 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +3 Query: 510 PLTPHSPPAMSPPAQATAFAFRRTNSPDPEDDRLPVFNRLF 632 P P++PP PP++ + R T SP P LP F +++ Sbjct: 149 PSRPNTPPPPPPPSKTHEPSRRITPSPPPPSKILP-FGKIY 188 >At3g48440.1 68416.m05288 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) Length = 448 Score = 28.3 bits (60), Expect = 5.2 Identities = 8/24 (33%), Positives = 13/24 (54%) Frame = +1 Query: 322 LCRTFHSVGFCPYGPRCHFVHNAE 393 +C + G C +GP C F H+ + Sbjct: 397 ICTYYSRYGICKFGPACRFDHSVQ 420 >At2g32930.1 68415.m04037 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) Length = 453 Score = 28.3 bits (60), Expect = 5.2 Identities = 9/21 (42%), Positives = 12/21 (57%) Frame = +1 Query: 325 CRTFHSVGFCPYGPRCHFVHN 387 C F + GFC +G C F H+ Sbjct: 313 CGNFKAYGFCKFGANCKFDHS 333 Score = 27.5 bits (58), Expect = 9.0 Identities = 10/23 (43%), Positives = 12/23 (52%) Frame = +1 Query: 325 CRTFHSVGFCPYGPRCHFVHNAE 393 CR F + G C YG C + H E Sbjct: 267 CRFFMNTGTCKYGDDCKYSHPKE 289 >At5g19800.1 68418.m02353 hydroxyproline-rich glycoprotein family protein similar to extensin [Catharanthus roseus] gi|1486263|dbj|BAA13175; contains proline-rich extensin domains, INTERPRO:IPR002965 Length = 96 Score = 27.9 bits (59), Expect = 6.8 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +3 Query: 510 PLTPHSPPAMSPPAQATAFAFRRTNSPDP 596 P++P PP PP Q+ A A++R + P P Sbjct: 46 PISPPPPPP-PPPPQSHAAAYKRYSPPPP 73 >At4g29190.1 68417.m04176 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) Length = 356 Score = 27.9 bits (59), Expect = 6.8 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Frame = +1 Query: 226 RSGGL*IWG*CQFAHGVRELRNLQRHP-KYKTELCRTFHSVGFCPYGPRCHFVHNAEEAR 402 R GG C+FAHGV E HP +Y+T+ C+ G C C F H+ ++ R Sbjct: 129 RKGGCKKGDSCEFAHGVFE---CWLHPARYRTQPCK---DGGNC-LRKICFFAHSPDQLR 181 >At1g59720.1 68414.m06720 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 638 Score = 27.9 bits (59), Expect = 6.8 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = +3 Query: 465 VVYERRVAIATLAAFPLTPHSPPAMSPPA 551 + Y ++I L PL+PH PPA SP A Sbjct: 14 ITYYHPMSIGLLV-HPLSPHIPPASSPSA 41 >At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) Length = 435 Score = 27.5 bits (58), Expect = 9.0 Identities = 8/22 (36%), Positives = 12/22 (54%) Frame = +1 Query: 322 LCRTFHSVGFCPYGPRCHFVHN 387 +C + G C +GP C F H+ Sbjct: 385 MCTHYSRYGICKFGPACRFDHS 406 >At3g52980.1 68416.m05840 RNA recognition motif (RRM)-containing protein predicted proteins, Arabidopsis thaliana Length = 381 Score = 27.5 bits (58), Expect = 9.0 Identities = 9/24 (37%), Positives = 15/24 (62%) Frame = +1 Query: 304 PKYKTELCRTFHSVGFCPYGPRCH 375 P++ ++C F+ GFC +G CH Sbjct: 163 PEFPLKICHYFNK-GFCKHGNNCH 185 >At2g45250.1 68415.m05633 expressed protein Length = 204 Score = 27.5 bits (58), Expect = 9.0 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Frame = +3 Query: 441 ALIGRIYGVVYERRVAIAT--LAAFPLTPHSPPAMSPPAQATAFAFRRTNSPDPEDDRL 611 A GR+ V RRV + T AA P+ PP +PP ++ A + P P +L Sbjct: 68 AASGRL--VYVRRRVEVDTSKAAASTTNPNPPPTKAPPQIPSSPAQAQAQEPTPTSHKL 124 >At1g62950.1 68414.m07108 leucine-rich repeat transmembrane protein kinase, putative contains protein kinase domains Length = 890 Score = 27.5 bits (58), Expect = 9.0 Identities = 22/71 (30%), Positives = 35/71 (49%) Frame = +3 Query: 282 TTQSSASS*IQDGAVSHFPFGWLLSLWTALPFRA*RRGSKTQRTIVARRFIGIALIGRIY 461 TT + AS+ +G V+ FG L+ +LP + + T+ + IGI IG +Y Sbjct: 559 TTPTQASTESGNGGVT---FGKLVLFSKSLPSKYEDWEAGTKALLDKDNIIGIGSIGAVY 615 Query: 462 GVVYERRVAIA 494 +E V+IA Sbjct: 616 RASFEGGVSIA 626 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,597,055 Number of Sequences: 28952 Number of extensions: 293946 Number of successful extensions: 1194 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 1026 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1189 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1496852856 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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