Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30299.Seq
         (835 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17160.1 68414.m02092 pfkB-type carbohydrate kinase family pr...    29   2.9  
At5g56450.1 68418.m07046 mitochondrial substrate carrier family ...    29   5.0  
At5g42420.1 68418.m05164 transporter-related low similarity to p...    29   5.0  
At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6 ...    29   5.0  
At4g40000.1 68417.m05664 NOL1/NOP2/sun family protein contains P...    29   5.0  
At1g23710.1 68414.m02993 expressed protein                             28   6.6  
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu...    28   8.8  
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu...    28   8.8  

>At1g17160.1 68414.m02092 pfkB-type carbohydrate kinase family
           protein contains Pfam profile: PF00294 pfkB family
           carbohydrate kinase
          Length = 379

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 21/74 (28%), Positives = 32/74 (43%)
 Frame = -2

Query: 762 VSRCHRIXDPXKILANSVTGDIXITLNVNVXGXVVQSWLAHLNVMDVVVLNPLFTKVHAV 583
           V++CH++     ++     G     L +     + QS +    V+D       FT   AV
Sbjct: 277 VAKCHKLGVKQVLVKLGSKGS---ALFIQGEKPIQQSIIPAAQVVDTTGAGDTFTAAFAV 333

Query: 582 AGVEFKVLEECCQF 541
           A VE K  EEC +F
Sbjct: 334 AMVEGKSHEECLRF 347


>At5g56450.1 68418.m07046 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 330

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 607 PLY*STRCCWRRIQSSRRMLSIYR 536
           P+Y ST  CW++I  S  + S YR
Sbjct: 276 PMYRSTLDCWKKIYRSEGLASFYR 299


>At5g42420.1 68418.m05164 transporter-related low similarity to
           phosphoenolpyruvate/phosphate translocator precursor
           [Mesembryanthemum crystallinum] GI:9295275,
           glucose-6-phosphate/phosphate-translocator precursor
           [Solanum tuberosum] GI:2997593
          Length = 350

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -2

Query: 681 VNVXGXVVQSWLAHLNVMDVVVLNPLFTKVHAVAGVEFKVLEE 553
           V + G V+ SW   L    ++    L +  H++   EF++L+E
Sbjct: 291 VAIVGMVIYSWAMELEKQSIIAAKALNSVKHSLTEEEFELLKE 333


>At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6
           WD-40 repeats (PF00400); rab11 binding protein, Bos
           taurus, EMBL:AF117897
          Length = 905

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = +1

Query: 160 HSFSSSKRTTLKPSDKKLISTTRKPLTSSATTAR*CRS---VWRRSHKRLPTFLRSICAP 330
           H+   ++R    PS   L+  +R      A++A   R    + + S  RL     +I AP
Sbjct: 150 HNSPVNQRVRRSPSMSVLLVRSRSDSDIEASSAEKQRKEEMLGKTSKSRLTRTASAIGAP 209

Query: 331 CARCCAY 351
           CAR C Y
Sbjct: 210 CARICPY 216


>At4g40000.1 68417.m05664 NOL1/NOP2/sun family protein contains Pfam
           profile PF01189: NOL1/NOP2/sun family
          Length = 783

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 84  QRPDYYNLHTEENYERVRFLDTYE-KTFVQFLQKDHFEAF 200
           Q+P   NLH EE Y+  R +   E  +F++FL+K    AF
Sbjct: 41  QKPICSNLHFEEYYKEQRIVKAQEWDSFMEFLRKPLPAAF 80


>At1g23710.1 68414.m02993 expressed protein
          Length = 295

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
 Frame = +1

Query: 154 RRHSFSSSKRTTLKPSDKKLISTTR--KPLTSSATTAR*CRSVWRRSHKRLPTFLRSICA 327
           R  S SSS  T  + +DKK+I+  +  K  TS+++  +   +  + +H++L    R++  
Sbjct: 207 RTRSSSSSSSTAAEENDKKVITEKKKGKEKTSTSSETKKKTTTTKSAHEKLYMRNRAMKE 266

Query: 328 PCARCCAYAIRQVHFHA*CNGL 393
                     +QV F    NGL
Sbjct: 267 EVKHRSYLPYKQVGFFTNVNGL 288


>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
           putative / TCP-1-epsilon, putative / chaperonin,
           putative identical to SWISS-PROT:O04450- T-complex
           protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
           thaliana]; strong similarity to SP|P54411 T-complex
           protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
           (TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
           TCP-1/cpn60 chaperonin family
          Length = 459

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = +3

Query: 132 VRFLDTYEKTFVQFLQKDHFEAFGQKIDFHDPKAINFVGNYGKIMQICMEKKSQKITN 305
           +R  + YE      +  +H E   QK +F        V NY  ++Q CM   S KI N
Sbjct: 51  IRIAEGYE--MASRVAVEHLERIAQKFEFD-------VNNYEPLVQTCMTTLSSKIVN 99


>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
           putative / TCP-1-epsilon, putative / chaperonin,
           putative identical to SWISS-PROT:O04450- T-complex
           protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
           thaliana]; strong similarity to SP|P54411 T-complex
           protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
           (TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
           TCP-1/cpn60 chaperonin family
          Length = 535

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = +3

Query: 132 VRFLDTYEKTFVQFLQKDHFEAFGQKIDFHDPKAINFVGNYGKIMQICMEKKSQKITN 305
           +R  + YE      +  +H E   QK +F        V NY  ++Q CM   S KI N
Sbjct: 127 IRIAEGYE--MASRVAVEHLERIAQKFEFD-------VNNYEPLVQTCMTTLSSKIVN 175


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,494,869
Number of Sequences: 28952
Number of extensions: 325016
Number of successful extensions: 909
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)