Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30298.Seq
         (830 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila...   139   2e-33
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila...   139   2e-33
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila...   139   2e-33
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)             139   2e-33
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)             139   2e-33
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)             134   7e-32
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila...    77   1e-14
At1g25350.1 68414.m03145 glutamine-tRNA ligase, putative / gluta...    32   0.54 
At3g20170.1 68416.m02557 armadillo/beta-catenin repeat family pr...    31   1.2  
At5g38830.1 68418.m04697 tRNA synthetase class I (C) family prot...    29   5.0  
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family...    29   5.0  
At3g07530.1 68416.m00899 expressed protein ; expression supporte...    28   6.6  
At1g64330.1 68414.m07290 myosin heavy chain-related similar to m...    28   6.6  

>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
           to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
           [Arabidopsis thaliana]
          Length = 244

 Score =  139 bits (336), Expect = 2e-33
 Identities = 68/134 (50%), Positives = 94/134 (70%)
 Frame = +1

Query: 280 KKKREIFKRAEQYVKEYRIKERDXIRLXRQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 459
           +K++ IF RA+QY KEY+ KER+ I+L R+A+ +G +YV  EAKL F+IRIRGIN + PK
Sbjct: 41  EKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPK 100

Query: 460 SXXFXQXFRLXQIX*WLFVRLNKATVNMLRIAXXYIAWGYPNLKSVREXVYKRGFRQAEW 639
           +    Q  RL QI   +F+++NKAT+NMLR    Y+ +GYPNLKSV+E +YKRGF +   
Sbjct: 101 TKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNH 160

Query: 640 TTYTNSLPNSIVEK 681
              T    NSIV++
Sbjct: 161 QR-TALTDNSIVDQ 173


>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
           to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
           [Arabidopsis thaliana]
          Length = 244

 Score =  139 bits (336), Expect = 2e-33
 Identities = 68/134 (50%), Positives = 94/134 (70%)
 Frame = +1

Query: 280 KKKREIFKRAEQYVKEYRIKERDXIRLXRQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 459
           +K++ IF RA+QY KEY+ KER+ I+L R+A+ +G +YV  EAKL F+IRIRGIN + PK
Sbjct: 41  EKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPK 100

Query: 460 SXXFXQXFRLXQIX*WLFVRLNKATVNMLRIAXXYIAWGYPNLKSVREXVYKRGFRQAEW 639
           +    Q  RL QI   +F+++NKAT+NMLR    Y+ +GYPNLKSV+E +YKRGF +   
Sbjct: 101 TKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNH 160

Query: 640 TTYTNSLPNSIVEK 681
              T    NSIV++
Sbjct: 161 QR-TALTDNSIVDQ 173


>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
           to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
           [Arabidopsis thaliana]
          Length = 244

 Score =  139 bits (336), Expect = 2e-33
 Identities = 68/134 (50%), Positives = 94/134 (70%)
 Frame = +1

Query: 280 KKKREIFKRAEQYVKEYRIKERDXIRLXRQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 459
           +K++ IF RA+QY KEY+ KER+ I+L R+A+ +G +YV  EAKL F+IRIRGIN + PK
Sbjct: 41  EKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPK 100

Query: 460 SXXFXQXFRLXQIX*WLFVRLNKATVNMLRIAXXYIAWGYPNLKSVREXVYKRGFRQAEW 639
           +    Q  RL QI   +F+++NKAT+NMLR    Y+ +GYPNLKSV+E +YKRGF +   
Sbjct: 101 TKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNH 160

Query: 640 TTYTNSLPNSIVEK 681
              T    NSIV++
Sbjct: 161 QR-TALTDNSIVDQ 173


>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 
          Length = 247

 Score =  139 bits (336), Expect = 2e-33
 Identities = 63/120 (52%), Positives = 87/120 (72%)
 Frame = +1

Query: 265 RSSAIKKKREIFKRAEQYVKEYRIKERDXIRLXRQARNRGNYYVPGEAKLAFVIRIRGIN 444
           +  +++ ++ IFKRAEQY KEY  K+ + IRL R+A+ +G +YV  EAKL F+IRIRGIN
Sbjct: 39  KKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGIN 98

Query: 445 QVSPKSXXFXQXFRLXQIX*WLFVRLNKATVNMLRIAXXYIAWGYPNLKSVREXVYKRGF 624
            + PK+    Q  RL QI   +F+++NKATVNMLR    Y+ +GYPNLKSV+E +YKRG+
Sbjct: 99  AIDPKTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGY 158


>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 
          Length = 242

 Score =  139 bits (336), Expect = 2e-33
 Identities = 63/120 (52%), Positives = 87/120 (72%)
 Frame = +1

Query: 265 RSSAIKKKREIFKRAEQYVKEYRIKERDXIRLXRQARNRGNYYVPGEAKLAFVIRIRGIN 444
           +  +++ ++ IFKRAEQY KEY  K+ + IRL R+A+ +G +YV  EAKL F+IRIRGIN
Sbjct: 34  KKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGIN 93

Query: 445 QVSPKSXXFXQXFRLXQIX*WLFVRLNKATVNMLRIAXXYIAWGYPNLKSVREXVYKRGF 624
            + PK+    Q  RL QI   +F+++NKATVNMLR    Y+ +GYPNLKSV+E +YKRG+
Sbjct: 94  AIDPKTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGY 153


>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
          Length = 242

 Score =  134 bits (324), Expect = 7e-32
 Identities = 66/134 (49%), Positives = 92/134 (68%)
 Frame = +1

Query: 280 KKKREIFKRAEQYVKEYRIKERDXIRLXRQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 459
           + ++ IFKRAEQY KEY  KE++ I L R+A+ +G +YV  EAKL F+IRIRGIN + PK
Sbjct: 39  ENRKLIFKRAEQYSKEYAEKEKELISLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPK 98

Query: 460 SXXFXQXFRLXQIX*WLFVRLNKATVNMLRIAXXYIAWGYPNLKSVREXVYKRGFRQAEW 639
           +    Q  RL QI   +F+++NKAT+NMLR    Y+ +G+PNLKSV+E +YKRG+ +   
Sbjct: 99  TKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEPYVTYGFPNLKSVKELIYKRGYGKLNH 158

Query: 640 TTYTNSLPNSIVEK 681
                +  NSIVE+
Sbjct: 159 QRIALT-DNSIVEQ 171


>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
           to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
           sapiens]
          Length = 247

 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 38/114 (33%), Positives = 62/114 (54%)
 Frame = +1

Query: 280 KKKREIFKRAEQYVKEYRIKERDXIRLXRQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 459
           KKK    KR E +V E+R KE D IR+ ++ +   +   P ++ L F+IRI+G N + PK
Sbjct: 43  KKKVSDIKRPEDFVHEFRAKEVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPK 102

Query: 460 SXXFXQXFRLXQIX*WLFVRLNKATVNMLRIAXXYIAWGYPNLKSVREXVYKRG 621
           +       +L  +   +F +   +    L     Y+ +GYPN KSV++ +YK+G
Sbjct: 103 TKRILNNLQLKSVFTGVFAKATDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKG 156


>At1g25350.1 68414.m03145 glutamine-tRNA ligase, putative /
           glutaminyl-tRNA synthetase, putative / GlnRS, putative
           similar to tRNA-glutamine synthetase GI:2995454 from
           [Lupinus luteus]
          Length = 795

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 661 PNSIVEKKASINTTIFLXLKDLHPWXFFPXLEEKFQVTXE 780
           P  + EKKA + TT     ++L+P+  FP  E+ F V  E
Sbjct: 203 PAKVEEKKAVVETTAEPSEEELNPYTIFPQPEQNFMVHTE 242


>At3g20170.1 68416.m02557 armadillo/beta-catenin repeat family
           protein contains Pfam profile: PF00514
           armadillo/beta-catenin-like repeat
          Length = 475

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +1

Query: 616 RGFRQAEWTTYTNSLPNSIVEKKASINTTIFLXLKDL 726
           RGF+  +W T  N   N+I    ASI     L L DL
Sbjct: 11  RGFQNPDWETEFNRFENAISSGSASIRVRSVLKLSDL 47


>At5g38830.1 68418.m04697 tRNA synthetase class I (C) family protein
           similar to SP|Q06752 Cysteinyl-tRNA synthetase (EC
           6.1.1.16) (Cysteine--tRNA ligase) (CysRS) {Bacillus
           subtilis}; contains Pfam profile PF01406: tRNA
           synthetases class I (C)
          Length = 511

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 21/69 (30%), Positives = 33/69 (47%)
 Frame = +2

Query: 263 GVLLPSRRRGKSSRGLNSTSRNTASRNVXKSDXPDKHAIVATTTFPGKPNWHLSSESVVS 442
           G LL   R G+    ++S  RN A   + K+  PD+ +  +    PG+P WH+  E    
Sbjct: 162 GQLLEHTRAGERV-AVDSRKRNPADFALWKAAKPDEPSWESPWG-PGRPGWHI--ECSAM 217

Query: 443 TKFHRSPXF 469
           +  + SP F
Sbjct: 218 SVHYLSPKF 226


>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 1696

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 20/52 (38%), Positives = 25/52 (48%)
 Frame = +2

Query: 305 GLNSTSRNTASRNVXKSDXPDKHAIVATTTFPGKPNWHLSSESVVSTKFHRS 460
           G + T R+  +R    SD  +K   V+ T   GK   HLS E  VS  F RS
Sbjct: 407 GASVTPRSIKARRALLSDKNEK---VSVTERNGKLGTHLSDEISVSEGFRRS 455


>At3g07530.1 68416.m00899 expressed protein ; expression supported
           by MPSS
          Length = 699

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/63 (23%), Positives = 24/63 (38%)
 Frame = -1

Query: 767 WNFSSXQGKNXQG*RSFXHRKMVVFMEAFFSTMLXGSELVYVVHSAWRNPRLYTXSRTLF 588
           W     Q K   G  SF H K +   +      +    L+Y   ++W+ P +   S    
Sbjct: 397 WLCEQRQEKLISGEPSFGHLKFIKNKKIHLFPAIHSPNLIYANRTSWQEPCIVFASHWSL 456

Query: 587 KLG 579
           +LG
Sbjct: 457 RLG 459


>At1g64330.1 68414.m07290 myosin heavy chain-related similar to
           myosin heavy chain (GI:1850913) [Entamoeba histolytica];
           similar to Intracellular protein transport protein USO1
           (Swiss-Prot:P25386) [Saccharomyces cerevisiae]
          Length = 555

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 235 H*EITG*LKRRSSAIKKKREIFKRAEQYVKEYRIKERDXIR 357
           H +I G  + R + IKK  + +K+A + ++EY  K  +  R
Sbjct: 281 HKQINGLFEEREATIKKLTDDYKQAREMLEEYMSKMEETER 321


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,629,490
Number of Sequences: 28952
Number of extensions: 267783
Number of successful extensions: 604
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1911862400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)