Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30284.Seq
         (702 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13530.1 68416.m01701 MAP3K epsilon protein kinase identical ...    31   0.98 
At1g10760.1 68414.m01231 starch excess protein (SEX1) identical ...    29   3.0  
At3g07980.1 68416.m00975 protein kinase, putative similar to MAP...    28   6.9  
At1g65580.1 68414.m07439 endonuclease/exonuclease/phosphatase fa...    27   9.1  

>At3g13530.1 68416.m01701 MAP3K epsilon protein kinase identical to
           MAP3K epsilon protein kinase [Arabidopsis thaliana]
           gi|3549652|emb|CAA12272
          Length = 1368

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 320 DSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELN 436
           D +G G+YG         N  +V +  +SLE IV E+LN
Sbjct: 24  DEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIVQEDLN 62


>At1g10760.1 68414.m01231 starch excess protein (SEX1) identical to
            SEX1 [Arabidopsis thaliana] GI:12044358; supporting cDNA
            gi|12044357|gb|AF312027.1|AF312027
          Length = 1399

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +2

Query: 299  TTDLNGSDSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELNMSV 445
            T+DL G+ S  +G Y      SW G P+ V L     E ++SE+ N +V
Sbjct: 1089 TSDLVGAKSRNIG-YLKGKVPSWVGIPTSVALPFGVFEKVISEKANQAV 1136


>At3g07980.1 68416.m00975 protein kinase, putative similar to MAP3K
           epsilon protein kinase [Arabidopsis thaliana]
           gi|3549652|emb|CAA12272
          Length = 1367

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 320 DSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELN 436
           D +G G+YG         N  +V +  +SLE I  E+LN
Sbjct: 24  DEIGKGAYGRVYIGLDLENGDFVAIKQVSLENIGQEDLN 62


>At1g65580.1 68414.m07439 endonuclease/exonuclease/phosphatase
           family protein similar to inositol polyphosphate
           5-phosphatase II isoform (GI:15418718) [Mus musculus];
           contains 6 (5 weak) Pfam: Pf00400 WD domain, G-beta
           repeats and Pfam PF03372:
           Endonuclease/Exonuclease/phosphatase family
          Length = 1101

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +2

Query: 335 GSYG*TNTNSWKGNPSYVPLGSISLEG-IVSEELNMSVGIFPWSKSL*ISAIGKESSLKM 511
           G +G     SW+ +   V   +IS  G I S     ++ ++PW       A+GK  SLKM
Sbjct: 213 GDHGIEEALSWQAHRGPVLSIAISAYGDIWSGSEGGALKVWPWD-----GALGKSLSLKM 267

Query: 512 QSQ*MNALS 538
           + + M AL+
Sbjct: 268 EERHMAALA 276


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,879,870
Number of Sequences: 28952
Number of extensions: 258197
Number of successful extensions: 644
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)