Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30267.Seq
(835 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Simi... 115 3e-26
At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Simi... 115 3e-26
At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60... 113 1e-25
At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) simi... 113 1e-25
At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138... 36 0.044
At1g54926.1 68414.m06272 hypothetical protein 31 1.2
At5g05900.1 68418.m00651 UDP-glucoronosyl/UDP-glucosyl transfera... 29 3.8
At4g24350.1 68417.m03494 phosphorylase family protein contains P... 29 3.8
At5g25320.1 68418.m03004 ACT domain-containing protein contains ... 28 6.6
At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase fa... 28 6.6
At2g13150.1 68415.m01450 expressed protein contains a bZIP trans... 28 6.6
At4g30860.1 68417.m04381 SET domain-containing protein low simil... 28 8.8
At1g20020.1 68414.m02507 ferredoxin--NADP(+) reductase, putative... 28 8.8
>At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Similar
to ribosomal protein L21 (gb|L38826). ESTs
gb|AA395597,gb|ATTS5197 come from this gene
Length = 164
Score = 115 bits (277), Expect = 3e-26
Identities = 55/111 (49%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Frame = +3
Query: 9 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 188
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 189 TGRVYNVTAHALGVIVNKRVRGGLYRS-ASISVLSMSSTPSADKTSLRESK 338
TGR++NVT A+GV VNK++ + R + V + + A++ LR+ K
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKK 111
Score = 70.9 bits (166), Expect = 1e-12
Identities = 35/76 (46%), Positives = 49/76 (64%)
Frame = +2
Query: 254 RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS 433
RII KRI++RVEHV+ S+C ++F R K+N+ L AKA G+T++ KRQP PK +V
Sbjct: 83 RIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKGPKPGFMVE 142
Query: 434 GTEKPVLLAXIPYEFV 481
G + IPY+ V
Sbjct: 143 GMTLET-VTPIPYDVV 157
>At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Similar
to L21 family of ribosomal protein; amino acid sequence
is identical to F21M12.8
Length = 164
Score = 115 bits (277), Expect = 3e-26
Identities = 55/111 (49%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Frame = +3
Query: 9 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 188
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 189 TGRVYNVTAHALGVIVNKRVRGGLYRS-ASISVLSMSSTPSADKTSLRESK 338
TGR++NVT A+GV VNK++ + R + V + + A++ LR+ K
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKK 111
Score = 70.9 bits (166), Expect = 1e-12
Identities = 35/76 (46%), Positives = 49/76 (64%)
Frame = +2
Query: 254 RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS 433
RII KRI++RVEHV+ S+C ++F R K+N+ L AKA G+T++ KRQP PK +V
Sbjct: 83 RIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKGPKPGFMVE 142
Query: 434 GTEKPVLLAXIPYEFV 481
G + IPY+ V
Sbjct: 143 GMTLET-VTPIPYDVV 157
>At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60S
ribosomal protein L21 GI:3885884 from [Oryza sativa]
Length = 164
Score = 113 bits (273), Expect = 1e-25
Identities = 54/111 (48%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Frame = +3
Query: 9 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 188
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 189 TGRVYNVTAHALGVIVNKRVRGGLYRS-ASISVLSMSSTPSADKTSLRESK 338
TGR++NVT A+GV VNK++ + R + V + + A++ LR+ +
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQ 111
Score = 71.7 bits (168), Expect = 5e-13
Identities = 35/76 (46%), Positives = 50/76 (65%)
Frame = +2
Query: 254 RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS 433
RII KRI++RVEHV+ S+C ++F R K+N+ L +AKA G+T++ KRQP PK +V
Sbjct: 83 RIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPKGPKPGFMVE 142
Query: 434 GTEKPVLLAXIPYEFV 481
G + IPY+ V
Sbjct: 143 GMTLET-VTPIPYDVV 157
>At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) similar
to 60S ribosomal protein L21 GB:Q43291 GI:2851508 from
[Arabidopsis thaliana]
Length = 164
Score = 113 bits (273), Expect = 1e-25
Identities = 54/111 (48%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Frame = +3
Query: 9 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 188
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 189 TGRVYNVTAHALGVIVNKRVRGGLYRS-ASISVLSMSSTPSADKTSLRESK 338
TGR++NVT A+GV VNK++ + R + V + + A++ LR+ +
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQ 111
Score = 71.7 bits (168), Expect = 5e-13
Identities = 35/76 (46%), Positives = 50/76 (65%)
Frame = +2
Query: 254 RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS 433
RII KRI++RVEHV+ S+C ++F R K+N+ L +AKA G+T++ KRQP PK +V
Sbjct: 83 RIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPKGPKPGFMVE 142
Query: 434 GTEKPVLLAXIPYEFV 481
G + IPY+ V
Sbjct: 143 GMTLET-VTPIPYDVV 157
>At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown;
Length = 672
Score = 35.5 bits (78), Expect = 0.044
Identities = 23/65 (35%), Positives = 29/65 (44%)
Frame = +3
Query: 159 GMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGGLYRSASISVLSMSSTPSADKTSLRESK 338
G P K Y+G GR+ AHAL NK L+R L+ P AD+ S + S
Sbjct: 182 GKPKKTYNGTYGRLLAYAAHALAEGQNKLEPKELWREPKDQALAWK--PCADQRSWKPSD 239
Query: 339 RMRGY 353
GY
Sbjct: 240 GKNGY 244
>At1g54926.1 68414.m06272 hypothetical protein
Length = 273
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 227 CDCQQACSRRIIPKRINIRVEHVKHSK 307
CD + C R+ PK +I +H KH K
Sbjct: 59 CDLSEGCKNRMTPKAFHIISQHPKHHK 85
>At5g05900.1 68418.m00651 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 450
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/54 (35%), Positives = 23/54 (42%)
Frame = -3
Query: 242 LVDNHTESMSSHVVHATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERN 81
L N S V + + FVW LLN SDV+ V +H R ERN
Sbjct: 346 LTHNGWNSTVESVFEGVPMICMPFVWDQLLNARFVSDVWMVG--LHLEGRIERN 397
>At4g24350.1 68417.m03494 phosphorylase family protein contains Pfam
PF01048: Phosphorylase family
Length = 336
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 134 DVYNVSNFVHFHVRGERNSSM 72
DV+NV VHF + G N+SM
Sbjct: 114 DVFNVKGIVHFGIAGNMNNSM 134
>At5g25320.1 68418.m03004 ACT domain-containing protein contains
Pfam ACT domain PF01842
Length = 500
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 146 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQ 238
C +GY+ ++ KDR R+ D C+ D Q
Sbjct: 291 CEERGYSIVTVKSKDRRRLMFDTICTLVDMQ 321
>At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase family
protein belongs to Pfam:PF03372:
Endonuclease/Exonuclease/phosphatase family; contains 3
WD-40 repeats (PF00400);similar to Type II
inositol-1,4,5-trisphosphate 5-phosphatase EC 3.1.3.56
(5PTASE) (INPP5B) (SP:P32019) [Homo sapiens]
Length = 1305
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +2
Query: 269 RINIRVEHVKHSKCRQDFLKRVKENERL 352
+ ++++EHV S RQ+F + +K NE++
Sbjct: 920 KFHVKIEHVDRSVRRQEFGRIIKTNEKV 947
>At2g13150.1 68415.m01450 expressed protein contains a bZIP
transcription factor basic domain signature (PDOC00036)
Length = 262
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +3
Query: 288 SMSSTPSADKTSLRESKRMRGY*RKPRLPARPST*RDSQLPLKLPTSSVELRNPS 452
S +STPS ++ + S P L PS+ R + +PL P++SVE R+ S
Sbjct: 4 SDNSTPSRPRSITQPSLAFSSL---PPLSPSPSSSRRNSIPLMNPSASVESRDSS 55
>At4g30860.1 68417.m04381 SET domain-containing protein low
similarity to IL-5 promoter REII-region-binding protein
[Homo sapiens] GI:12642795; contains Pfam profile
PF00856: SET domain
Length = 497
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +2
Query: 188 DRSRVQR-DC-SCSR-CDCQQACSRRIIPKRINIRVEHVKH 301
DRS V R C SCS+ C C ++C R K I++ +H
Sbjct: 295 DRSCVCRVQCISCSKGCSCPESCGNRPFRKEKKIKIVKTEH 335
>At1g20020.1 68414.m02507 ferredoxin--NADP(+) reductase, putative /
adrenodoxin reductase, putative strong similarity to
Ferredoxin--NADP reductase, chloroplast precursor (EC
1.18.1.2) (FNR) from {Pisum sativum} SP|P10933,
{Mesembryanthemum crystallinum} SP|P41343, {Spinacia
oleracea} SP|P00455, [Capsicum annuum] GI:6899972
Length = 369
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 108 YKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVN 239
Y+ G V + +G + G PHKV R+Y++ + ALG + N
Sbjct: 125 YREGQSVGVIADGIDKNGKPHKV------RLYSIASSALGDLGN 162
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,652,737
Number of Sequences: 28952
Number of extensions: 329036
Number of successful extensions: 884
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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