Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30266.Seq
(784 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro... 47 2e-05
At4g23800.1 68417.m03422 high mobility group (HMG1/2) family pro... 46 4e-05
At1g20693.1 68414.m02592 high mobility group protein beta1 (HMGb... 43 2e-04
At2g34450.1 68415.m04227 high mobility group (HMG1/2) family pro... 41 8e-04
At5g23420.1 68418.m02747 high mobility group (HMG1/2) family pro... 41 0.001
At3g28730.1 68416.m03587 structure-specific recognition protein ... 41 0.001
At1g20696.1 68414.m02593 high mobility group protein beta2 (HMGb... 41 0.001
At3g51880.2 68416.m05690 high mobility group protein alpha (HMGa... 40 0.001
At3g51880.1 68416.m05689 high mobility group protein alpha (HMGa... 40 0.001
At2g17560.1 68415.m02032 high mobility group protein gamma (HMGg... 38 0.008
At1g65090.1 68414.m07379 expressed protein 33 0.16
At4g35570.1 68417.m05054 high mobility group protein delta (HMGd... 33 0.28
At5g27120.1 68418.m03237 SAR DNA-binding protein, putative stron... 31 0.65
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 31 1.1
At5g08240.1 68418.m00967 expressed protein 30 1.5
At4g33390.1 68417.m04746 hypothetical protein contains Pfam prof... 30 2.0
>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
protein similar to SP|P40618 High mobility group protein
HMG2A {Gallus gallus}; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 446
Score = 46.8 bits (106), Expect = 2e-05
Identities = 20/46 (43%), Positives = 33/46 (71%)
Frame = +3
Query: 84 KPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDK 221
KPK+P+SAYL++ N R+ +K +N V E+AK AGE W+++ ++
Sbjct: 245 KPKQPISAYLIYANERRAALKGENK--SVIEVAKMAGEEWKNLSEE 288
Score = 34.3 bits (75), Expect = 0.092
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +3
Query: 81 DKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 212
+KPK+P S+Y L+ AR + +++PG+ + + W +
Sbjct: 370 NKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTAHISLKWMEL 413
Score = 31.1 bits (67), Expect = 0.86
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +3
Query: 90 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 212
KRP + Y+LW +++K NP E + G W+ +
Sbjct: 130 KRPSTPYILWCKDNWNEVKKQNPEADFKETSNILGAKWKGI 170
>At4g23800.1 68417.m03422 high mobility group (HMG1/2) family
protein similar to HMG2B [Homo sapiens] GI:32335;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 456
Score = 45.6 bits (103), Expect = 4e-05
Identities = 19/46 (41%), Positives = 32/46 (69%)
Frame = +3
Query: 84 KPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDK 221
KPK P+SA+L++ N R+ ++++N V E+AK GE W+++ DK
Sbjct: 254 KPKHPVSAFLVYANERRAALREENK--SVVEVAKITGEEWKNLSDK 297
Score = 35.9 bits (79), Expect = 0.030
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 90 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 212
KRP S+Y+LW +++K +NP E + G W+S+
Sbjct: 139 KRPSSSYVLWCKDQWTEVKKENPEADFKETSNILGAKWKSL 179
Score = 33.1 bits (72), Expect = 0.21
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +3
Query: 81 DKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDK 221
+KPK+P S+Y L+ R K+ ++ PG + W+ + ++
Sbjct: 377 NKPKKPASSYFLFSKDERKKLTEERPGTNNATVTALISLKWKELSEE 423
>At1g20693.1 68414.m02592 high mobility group protein beta1
(HMGbeta1) / HMG protein beta1 nearly identical to HMG
protein (HMGbeta1) [Arabidopsis thaliana] GI:2832359
Length = 144
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +3
Query: 72 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSMYD 218
K +KPKRP SA+ +++ R K +NP K V + K AG+ W+S+ D
Sbjct: 33 KDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSD 82
>At2g34450.1 68415.m04227 high mobility group (HMG1/2) family
protein similar to HMG protein [Arabidopsis thaliana]
GI:2832361; contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 151
Score = 41.1 bits (92), Expect = 8e-04
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +3
Query: 78 TDKPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSM 212
T PK+P +A+ +L+ R + +++NP +K + EI K GE W++M
Sbjct: 60 TKMPKKPATAFFFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTM 105
>At5g23420.1 68418.m02747 high mobility group (HMG1/2) family
protein similar to high mobility group protein 2 HMG2
[Ipomoea nil] GI:1052956; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 241
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/48 (31%), Positives = 31/48 (64%)
Frame = +3
Query: 78 TDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDK 221
++KPKRP++A+ ++++ R K ++ G + AK GE W+S+ ++
Sbjct: 112 SNKPKRPLTAFFIFMSDFRKTFKSEHNGSLAKDAAKIGGEKWKSLTEE 159
>At3g28730.1 68416.m03587 structure-specific recognition protein 1 /
high mobility group protein / HMG protein nearly
identical to SP|Q05153 Structure-specific recognition
protein 1 homolog (HMG protein) {Arabidopsis thaliana};
contains Pfam profile PF00505: HMG (high mobility group)
box; contains Pfam profile PF03531: Structure-specific
recognition protein
Length = 646
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +3
Query: 72 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 212
K + PKR MS ++ + R IK ++PG+ E+ K G+ WR M
Sbjct: 557 KDPNAPKRAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQM 603
>At1g20696.1 68414.m02593 high mobility group protein beta2
(HMGbeta2) / HMG protein beta2 nearly identical to HMG
protein (HMGbeta2) [Arabidopsis thaliana] GI:2832361
Length = 141
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +3
Query: 72 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSMYD 218
K +KPKRP SA+ +++ R K+++P K V + K GE W+S+ D
Sbjct: 30 KDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSD 79
>At3g51880.2 68416.m05690 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 185
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +3
Query: 72 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSM 212
K +KPKR SA+ ++L R K +NP +K V+ + K G+ W+SM
Sbjct: 48 KDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSM 95
>At3g51880.1 68416.m05689 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 178
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +3
Query: 72 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSM 212
K +KPKR SA+ ++L R K +NP +K V+ + K G+ W+SM
Sbjct: 48 KDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSM 95
>At2g17560.1 68415.m02032 high mobility group protein gamma
(HMGgamma) / HMG protein gamma nearly identical to HMG
protein (HMGgamma) [Arabidopsis thaliana] GI:2832355
Length = 138
Score = 37.9 bits (84), Expect = 0.008
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 72 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSMYDK 221
K ++PKRP SA+ ++L R + NP K V + K AG W++M D+
Sbjct: 30 KDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDE 80
>At1g65090.1 68414.m07379 expressed protein
Length = 284
Score = 33.5 bits (73), Expect = 0.16
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +1
Query: 310 EKKENPKTREESETGAKNKESETGR 384
EK+E P+TR E ETGA E+ TG+
Sbjct: 178 EKREAPETRREGETGATKIETSTGK 202
>At4g35570.1 68417.m05054 high mobility group protein delta
(HMGdelta) / HMG protein delta identical to HMG protein
(HMGdelta) [Arabidopsis thaliana] GI:2832363
Length = 125
Score = 32.7 bits (71), Expect = 0.28
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +3
Query: 72 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSMYDK 221
K ++PK+P S + ++L+ R + NP K V + + AG+ W++M ++
Sbjct: 29 KDPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEE 79
>At5g27120.1 68418.m03237 SAR DNA-binding protein, putative strong
similarity to SAR DNA-binding protein-1 [Pisum sativum]
GI:3132696; contains Pfam profile PF01798: Putative
snoRNA binding domain
Length = 533
Score = 31.5 bits (68), Expect = 0.65
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +1
Query: 184 KKQAKSGGPCMTKANGKKRRQKPKTIHCRFRII*CKWRRSRREKKENPKTREESETGAKN 363
+++AK+ P K+N KK +P+T + K R+ E+ E P ++E K
Sbjct: 469 EEEAKTEEPSKKKSNKKKTEAEPETAEEPAKKEKKKKRKHEEEETEMPAKKKEKSEKKKK 528
Query: 364 KESE 375
K++E
Sbjct: 529 KKTE 532
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/63 (23%), Positives = 29/63 (46%)
Frame = +1
Query: 181 PKKQAKSGGPCMTKANGKKRRQKPKTIHCRFRII*CKWRRSRREKKENPKTREESETGAK 360
PKK A SG + + K IH +F + + + RR+ + P +++E++
Sbjct: 272 PKKDALSGSDSQSLNQSTVSMARKKRIHAQFNDLQECYLQKRRQLADQPNSKQENDKSVV 331
Query: 361 NKE 369
+E
Sbjct: 332 RRE 334
>At5g08240.1 68418.m00967 expressed protein
Length = 258
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Frame = +1
Query: 199 SGGPCMTKANG---KKRRQK--PKTIHC-RFRII*CKWRRSRREKKENPKTREESETGAK 360
S P +TK +G KK ++K P+ C +FR+ + + S E+ E P +R E ET K
Sbjct: 30 SDKPMVTKGDGGEKKKMKKKRIPRWFLCSKFRLKNSEIKPSPIEETEKPTSRVEDETDDK 89
Query: 361 NKESETGRR 387
K RR
Sbjct: 90 QKPLSVIRR 98
>At4g33390.1 68417.m04746 hypothetical protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827)
Length = 779
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 289 KWRRSRREKKENPKTREESETGAKNKESET 378
KWR +K++N + +S G+K KE+ET
Sbjct: 712 KWREVSEKKRKNGSSHGKSIQGSKEKEAET 741
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,189,229
Number of Sequences: 28952
Number of extensions: 233311
Number of successful extensions: 645
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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