Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30252.Seq
         (774 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16500.1 68416.m02106 auxin-responsive AUX/IAA family protein...    29   3.4  
At2g05120.1 68415.m00539 expressed protein                             29   3.4  

>At3g16500.1 68416.m02106 auxin-responsive AUX/IAA family protein
           similar to SP|O24408|AXII_ARATH Auxin-responsive protein
           IAA18 (Indoleacetic acid-induced protein 18)
           {Arabidopsis thaliana}; contains Pfam profile: PF02309:
           AUX/IAA family
          Length = 269

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 564 IISVSMLHVIKSSSLNVGKTMGCSSRKCFYH 656
           + SV  L VIKSS ++   T GCS ++   H
Sbjct: 239 VSSVKRLRVIKSSEISSALTFGCSKQEKMMH 269


>At2g05120.1 68415.m00539 expressed protein 
          Length = 1234

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +3

Query: 444 LTWHGTSTVCEWCWCGMEFKIRILVDTGK 530
           + WH  + VC   WC   F + +L +  +
Sbjct: 827 IPWHSQTVVCNGLWCIASFMLHLLTEASR 855


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,201,280
Number of Sequences: 28952
Number of extensions: 327393
Number of successful extensions: 663
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)