Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30215.Seq
         (344 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri...   123   4e-29
At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri...   122   9e-29
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim...    29   1.1  
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si...    29   1.1  
At4g32190.1 68417.m04581 centromeric protein-related low similar...    27   2.5  
At4g15880.1 68417.m02413 Ulp1 protease family protein contains P...    27   3.4  
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi...    26   5.9  
At5g40470.1 68418.m04908 expressed protein                             26   7.7  
At2g20330.1 68415.m02374 transducin family protein / WD-40 repea...    26   7.7  

>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
           ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
          Length = 197

 Score =  123 bits (296), Expect = 4e-29
 Identities = 57/85 (67%), Positives = 70/85 (82%)
 Frame = +1

Query: 1   VNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAREL 180
           VN R    + KT+  PRRP+EK RLD ELK++GEYGLR KRE+WRV+YTL+RIR AAREL
Sbjct: 2   VNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAAREL 61

Query: 181 LTLEEKDPKRLFEGNALLRRLVRIG 255
           LTL+EK+P+R+FEG ALLRR+ R G
Sbjct: 62  LTLDEKNPRRIFEGEALLRRMNRYG 86



 Score = 46.4 bits (105), Expect = 5e-06
 Identities = 22/32 (68%), Positives = 25/32 (78%)
 Frame = +3

Query: 249 YWVLDEKQMKLDYVLGLKIXDFLERRLQTQVF 344
           Y +LDE Q KLDYVL L + +FLERRLQT VF
Sbjct: 85  YGLLDETQNKLDYVLALTVENFLERRLQTIVF 116


>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
           ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
          Length = 198

 Score =  122 bits (293), Expect = 9e-29
 Identities = 53/77 (68%), Positives = 67/77 (87%)
 Frame = +1

Query: 25  FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 204
           + KT+  PRRP+EK RLD ELK++GEYGLRNKRE+WRV+Y+L+RIR AAR+LLTL+EK P
Sbjct: 10  YGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSP 69

Query: 205 KRLFEGNALLRRLVRIG 255
           +R+FEG ALLRR+ R G
Sbjct: 70  RRIFEGEALLRRMNRYG 86



 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 22/32 (68%), Positives = 25/32 (78%)
 Frame = +3

Query: 249 YWVLDEKQMKLDYVLGLKIXDFLERRLQTQVF 344
           Y +LDE Q KLDYVL L + +FLERRLQT VF
Sbjct: 85  YGLLDESQNKLDYVLALTVENFLERRLQTIVF 116


>At5g41240.1 68418.m05011 glutathione S-transferase, putative
           similar to glutathione S-transferase, GST 10b
           GB:CAA10662 [Arabidopsis thaliana] 37349.
          Length = 591

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 252 WVLDEKQMKLDYVLGLKIXDFLERRLQTQ 338
           WVLDE++  +D  LG+K     ER++ T+
Sbjct: 478 WVLDEEEQVMDLPLGVKSSKQKERKVATK 506


>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
           similar to chloroplast membrane protein (ALBINO3)
           (GI:3927828) [Arabidopsis thaliana]
          Length = 1013

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +1

Query: 31  KTYVTPRR-PFEKARLDQ-ELKIIGEYGLRNKREVWRVKYT 147
           K ++ PRR P  +    Q E K   EYG RN  E W +  T
Sbjct: 479 KYFIKPRRHPESECSATQTEYKFTSEYGKRNSSECWAMTTT 519


>At4g32190.1 68417.m04581 centromeric protein-related low similarity
           to SP|Q02224 Centromeric protein E (CENP-E protein)
           {Homo sapiens}
          Length = 783

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +1

Query: 100 EYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRL 243
           +YG+ NKR V  + +T   +R    E+L ++     +  E N ++ RL
Sbjct: 599 DYGMENKRLVMELSFTRENLRMKEMEVLAVQRALTFKDEEINVVMGRL 646


>At4g15880.1 68417.m02413 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; low similarity to
           sentrin/SUMO-specific protease [Homo sapiens]
           GI:6906859;  identical to cDNA hypothetical protein,
           partial (1189 bp) GI:2326349
          Length = 489

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 16  PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREV 129
           P    K    PR PF     D+E ++   +  RN+R+V
Sbjct: 242 PKTVEKRVEVPREPFIPLTEDEEAEVYRAFSGRNRRKV 279


>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
           similarity to unknown protein (ref|NP_005638.1)
          Length = 613

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 269 TDETRLCAWSEDXGLLGASSADA 337
           T E   CAWS    LL + S DA
Sbjct: 265 TSEVCACAWSPSASLLASGSGDA 287


>At5g40470.1 68418.m04908 expressed protein
          Length = 496

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 120 LVAETVLSDDLQLLVKTCLFKRTTRC 43
           L AET+ SD+L  ++ +C F     C
Sbjct: 103 LKAETIFSDELISIISSCCFNLRNLC 128


>At2g20330.1 68415.m02374 transducin family protein / WD-40 repeat
           family protein similar to Transcriptional repressor
           rco-1 (SP:P78706) [Neurospora crassa]; similar to
           TUP1(GB:AF079369); contains 6 WD-40 repeats (PF00400)
          Length = 648

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 253 QYEPDDVEGHYLRTISWGPS 194
           Q EP   EGH +R++SW P+
Sbjct: 218 QIEPS--EGHQVRSVSWSPT 235


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,700,142
Number of Sequences: 28952
Number of extensions: 115950
Number of successful extensions: 313
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 419412672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)