Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30205.Seq
(559 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C) 113 6e-26
At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same... 113 6e-26
At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi... 112 1e-25
At3g49080.1 68416.m05362 ribosomal protein S9 family protein con... 39 0.003
At1g43570.1 68414.m05001 hypothetical protein 31 0.39
At2g46560.1 68415.m05808 transducin family protein / WD-40 repea... 27 6.4
At5g48630.1 68418.m06014 cyclin family protein similar to SP|P55... 27 8.5
At5g47360.1 68418.m05837 pentatricopeptide (PPR) repeat-containi... 27 8.5
At3g24255.1 68416.m03045 expressed protein 27 8.5
At2g11810.1 68415.m01269 1,2-diacylglycerol 3-beta-galactosyltra... 27 8.5
>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
Length = 146
Score = 113 bits (273), Expect = 6e-26
Identities = 51/60 (85%), Positives = 58/60 (96%)
Frame = +3
Query: 255 AISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 434
+I+KAL+A+YQKYVDE SKKEIKDILV+YDR+LLVADPRRCEPKKFGG GAR+RYQKSYR
Sbjct: 87 SIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146
Score = 109 bits (263), Expect = 9e-25
Identities = 46/85 (54%), Positives = 68/85 (80%)
Frame = +1
Query: 1 ARREPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKE 180
A + ++VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EP+LLLGK
Sbjct: 2 ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKH 61
Query: 181 KFSMVDIRVTVKGGGHVAQVYAIRQ 255
+F+ V++R+ V GGGH +QVYAIRQ
Sbjct: 62 RFAGVNMRIRVNGGGHTSQVYAIRQ 86
>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
GB:Q42340
Length = 146
Score = 113 bits (273), Expect = 6e-26
Identities = 51/60 (85%), Positives = 58/60 (96%)
Frame = +3
Query: 255 AISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 434
+I+KAL+A+YQKYVDE SKKEIKDILV+YDR+LLVADPRRCEPKKFGG GAR+RYQKSYR
Sbjct: 87 SIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146
Score = 110 bits (264), Expect = 7e-25
Identities = 47/85 (55%), Positives = 68/85 (80%)
Frame = +1
Query: 1 ARREPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKE 180
A + ++VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EPILLLGK
Sbjct: 2 ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKH 61
Query: 181 KFSMVDIRVTVKGGGHVAQVYAIRQ 255
+F+ V++R+ V GGGH +QVYAIRQ
Sbjct: 62 RFAGVNMRIRVNGGGHTSQVYAIRQ 86
>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
thaliana]
Length = 146
Score = 112 bits (270), Expect = 1e-25
Identities = 50/60 (83%), Positives = 58/60 (96%)
Frame = +3
Query: 255 AISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 434
+I+KAL+A+YQKYVDE SKKEIKDIL++YDR+LLVADPRRCE KKFGGPGARAR+QKSYR
Sbjct: 87 SIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRCESKKFGGPGARARFQKSYR 146
Score = 111 bits (266), Expect = 4e-25
Identities = 46/79 (58%), Positives = 66/79 (83%)
Frame = +1
Query: 19 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVD 198
++VQ FGRKKTATAV YCKRG GM+++NG P++L +P +L++K+ EP+LLLGK +F+ VD
Sbjct: 8 ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67
Query: 199 IRVTVKGGGHVAQVYAIRQ 255
+R+ GGG+ ++VYAIRQ
Sbjct: 68 MRIRATGGGNTSRVYAIRQ 86
>At3g49080.1 68416.m05362 ribosomal protein S9 family protein
contains Pfam profile PF00380: ribosomal protein S9
Length = 430
Score = 38.7 bits (86), Expect = 0.003
Identities = 24/72 (33%), Positives = 37/72 (51%)
Frame = +1
Query: 37 GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 216
GR+K + A + + G G +VN + D+ P +L ++ L + DI+ TVK
Sbjct: 310 GRRKCSIARVWIQPGEGKFQVNEKEFDVYFP-MLDHRAALLRPLAETKTLGRWDIKCTVK 368
Query: 217 GGGHVAQVYAIR 252
GGG QV AI+
Sbjct: 369 GGGTTGQVGAIQ 380
>At1g43570.1 68414.m05001 hypothetical protein
Length = 348
Score = 31.5 bits (68), Expect = 0.39
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -1
Query: 376 QRRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIR 269
+R S T + LSYC R+ LI S T FW A R
Sbjct: 19 KRISSWTGRFLSYCGRLQLIKSVLMSITNFWSSAFR 54
>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
family protein similar to CPY (GI:3096961) {Chironomus
thummi}; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
Length = 2471
Score = 27.5 bits (58), Expect = 6.4
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 225 SCSTSLRYQTAISKALIAFYQKYVDEASKKEIKDILVQYDRSLL 356
SC R+Q + AL F+Q++ AS IL Y+R LL
Sbjct: 1563 SCEKFSRFQHKLQTALEQFHQRFSLSASYLRNMMILSAYNRGLL 1606
>At5g48630.1 68418.m06014 cyclin family protein similar to SP|P55168
Cyclin C {Gallus gallus}; contains Pfam profile PF00134:
Cyclin, N-terminal domain
Length = 253
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +3
Query: 249 QTAISKALIAFYQK--YVDEASKKEIKDIL 332
++ + L+ FY K Y DE + EIKDIL
Sbjct: 99 ESVVHAKLLVFYMKKLYADEKFRYEIKDIL 128
>At5g47360.1 68418.m05837 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 477
Score = 27.1 bits (57), Expect = 8.5
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 234 TSLRYQTAISKALIAFYQKYVDEAS-KKEIKDILVQYDRSLLVADPRRCEPKKF 392
++LR+ T +S A + Q ++ +KE+ VQ D S + RRC+P +F
Sbjct: 22 SALRFLTTVSAAERLYGQLQGCTSNLEKELASANVQLDSSCINEVLRRCDPNQF 75
>At3g24255.1 68416.m03045 expressed protein
Length = 836
Score = 27.1 bits (57), Expect = 8.5
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 373 RRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIR 269
R G T++ LS+ R+ LIS S T FW A R
Sbjct: 142 RIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFR 176
>At2g11810.1 68415.m01269 1,2-diacylglycerol
3-beta-galactosyltransferase, putative /
monogalactosyldiacylglycerol synthase, putative / MGDG
synthase, putative identical to
monogalactosyldiacylglycerol synthase type C
[gi:9927295] from Arabidopsis thaliana, similar to MGDG
synthase type A [gi:9884651] from Glycine max
Length = 465
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 169 LGKEKFSMVDIRVTVKGGGHVAQVYAIRQLFQ 264
+G E+ V I ++ GGGH A AIR F+
Sbjct: 67 MGAERIKTVLILMSDTGGGHRASAEAIRDAFK 98
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,079,027
Number of Sequences: 28952
Number of extensions: 240332
Number of successful extensions: 711
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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