Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30183.Seq
         (720 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45190.1 68418.m05547 cyclin family protein similar to cyclin...    31   0.58 
At3g13530.1 68416.m01701 MAP3K epsilon protein kinase identical ...    31   1.0  
At3g53930.1 68416.m05958 protein kinase family protein contains ...    29   3.1  
At1g10760.1 68414.m01231 starch excess protein (SEX1) identical ...    29   3.1  
At3g07980.1 68416.m00975 protein kinase, putative similar to MAP...    28   7.2  
At2g29100.1 68415.m03537 glutamate receptor family protein (GLR2...    28   7.2  
At3g03480.1 68416.m00346 transferase family protein similar to h...    27   9.5  

>At5g45190.1 68418.m05547 cyclin family protein similar to cyclin T1
           [Equus caballus] GI:5052355; contains Pfam profile
           PF00134: Cyclin, N-terminal domain
          Length = 579

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 25/82 (30%), Positives = 37/82 (45%)
 Frame = -2

Query: 719 FNHKPFTVTIDIKSDVATNAVVKMFLGPKYDENGFPFSLEDNWMNFYELDWFVQKVNPGQ 540
           F H+ F      K+D  T A V MFL  K +E   P  L+D     YE+   + K +PG 
Sbjct: 87  FCHRFFFRQSHAKNDRRTIATVCMFLAGKVEET--PRPLKDVIFVSYEI---INKKDPGA 141

Query: 539 SQITRSSTDFDSSKKTLYRWPK 474
           SQ  +    ++  K+ +    K
Sbjct: 142 SQKIKQKEVYEQQKELILNGEK 163


>At3g13530.1 68416.m01701 MAP3K epsilon protein kinase identical to
           MAP3K epsilon protein kinase [Arabidopsis thaliana]
           gi|3549652|emb|CAA12272
          Length = 1368

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 317 DSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELN 433
           D +G G+YG         N  +V +  +SLE IV E+LN
Sbjct: 24  DEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIVQEDLN 62


>At3g53930.1 68416.m05958 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 711

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = -1

Query: 432 FNSSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYPFD-RP 256
           F+SS + PSR +      DG PF L       E +P     FK   P    +G+  + R 
Sbjct: 298 FHSSGSSPSRNIEEISQEDGLPFFLDDDSSGPEGSPSS---FKHTSPMKSSYGFSVERRE 354

Query: 255 VFLSTSNNLTCSSRRS 208
             LS   N+  SSR S
Sbjct: 355 AALSPLKNMDLSSRYS 370


>At1g10760.1 68414.m01231 starch excess protein (SEX1) identical to
            SEX1 [Arabidopsis thaliana] GI:12044358; supporting cDNA
            gi|12044357|gb|AF312027.1|AF312027
          Length = 1399

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +2

Query: 296  TTDLNGSDSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELNMSV 442
            T+DL G+ S  +G Y      SW G P+ V L     E ++SE+ N +V
Sbjct: 1089 TSDLVGAKSRNIG-YLKGKVPSWVGIPTSVALPFGVFEKVISEKANQAV 1136


>At3g07980.1 68416.m00975 protein kinase, putative similar to MAP3K
           epsilon protein kinase [Arabidopsis thaliana]
           gi|3549652|emb|CAA12272
          Length = 1367

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 317 DSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELN 433
           D +G G+YG         N  +V +  +SLE I  E+LN
Sbjct: 24  DEIGKGAYGRVYIGLDLENGDFVAIKQVSLENIGQEDLN 62


>At2g29100.1 68415.m03537 glutamate receptor family protein (GLR2.9)
           plant glutamate receptor family, PMID:11379626
          Length = 940

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 20/64 (31%), Positives = 28/64 (43%)
 Frame = -1

Query: 336 EPTPKESEPFKSVVPDNKPFGYPFDRPVFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLT 157
           EPT K    F    P N P    F R +   T NN+T      W   K+N  P  +T L+
Sbjct: 743 EPTFKTGG-FGFAFPKNSPLTGEFSRAILNLTQNNVTQQIEDRWFP-KKNDCPDPMTALS 800

Query: 156 IHQI 145
            +++
Sbjct: 801 SNRL 804


>At3g03480.1 68416.m00346 transferase family protein similar to
           hypersensitivity-related gene GB:CAA64636 [Nicotiana
           tabacum]; contains Pfam transferase family domain
           PF00248
          Length = 454

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = -1

Query: 414 MPSRLMLPKGTYDGFPFQLF----VFVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVFL 247
           M  ++ LP+ T  G  F++       V P +PTP+E +P  S + D +  G  F  PV  
Sbjct: 1   MDHQVSLPQSTTTGLSFKVHRQQRELVTPAKPTPRELKPL-SDIDDQQ--GLRFQIPVIF 57

Query: 246 STSNNLT 226
               NL+
Sbjct: 58  FYRPNLS 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,683,108
Number of Sequences: 28952
Number of extensions: 283787
Number of successful extensions: 793
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)