Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30156.Seq
(961 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 159 3e-39
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 159 3e-39
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 157 1e-38
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 157 1e-38
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 157 1e-38
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 157 1e-38
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 48 1e-05
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 30 2.6
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 29 4.6
At1g06470.2 68414.m00686 phosphate translocator-related low simi... 29 4.6
At1g06470.1 68414.m00685 phosphate translocator-related low simi... 29 4.6
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 8.0
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 28 8.0
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 159 bits (386), Expect = 3e-39
Identities = 75/106 (70%), Positives = 87/106 (82%)
Frame = +1
Query: 226 RQTREHLLVFLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG 405
+Q + L LP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NG
Sbjct: 70 KQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNG 129
Query: 406 HIGLGVKCSKEVATAIRGAIILAKLSVLTSPKKLRGNKIGKPHNRP 543
H+GLGVKCSKEVATAIRGAIILAKLSV+ + GNKIGKPH P
Sbjct: 130 HVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVP 175
Score = 46.8 bits (106), Expect = 2e-05
Identities = 39/148 (26%), Positives = 65/148 (43%), Gaps = 3/148 (2%)
Frame = +2
Query: 167 DQKEWVPVTKLGRLVREGKIDKLESIYLFFYQSKNSR---SLISSSARP*MMRFLRSCLY 337
++++WVPVTKLGRLV G I ++E IYL K + LI + + +M+ + +
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMP--VQ 107
Query: 338 RNKHVPDSAHVSRHLLPLATTTVILVWV*SAARKSPLPFEALLSLLSCQF*PVRRSYGVT 517
+ ++ + + V +++ + L PVRR Y
Sbjct: 108 KQTRAGQRTRFKAFVVVGDGNGHVGLGV-KCSKEVATAIRGAIILAKLSVVPVRRGYWGN 166
Query: 518 R*ESHTTVPCKVXGQXWFPKQFRLIPAP 601
+ TVPCKV G+ R++PAP
Sbjct: 167 KIGKPHTVPCKVTGKCG-SVTVRMVPAP 193
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 159 bits (385), Expect = 3e-39
Identities = 73/96 (76%), Positives = 84/96 (87%)
Frame = +1
Query: 256 LPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSK 435
LP+KE++IID +GPSL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+GLGVKCSK
Sbjct: 71 LPVKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSK 130
Query: 436 EVATAIRGAIILAKLSVLTSPKKLRGNKIGKPHNRP 543
EVATAIRGAIILAKLSV+ + GNKIGKPH P
Sbjct: 131 EVATAIRGAIILAKLSVVPIRRGYWGNKIGKPHTVP 166
Score = 56.0 bits (129), Expect = 3e-08
Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 3/148 (2%)
Frame = +2
Query: 167 DQKEWVPVTKLGRLVREGKIDKLESIYLFFYQSKNSR---SLISSSARP*MMRFLRSCLY 337
++++WVPVTKLGRLV+EGKI K+E IYL K + L+ S + +M+ + +
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMP--VQ 98
Query: 338 RNKHVPDSAHVSRHLLPLATTTVILVWV*SAARKSPLPFEALLSLLSCQF*PVRRSYGVT 517
+ ++ + + + V +++ + L P+RR Y
Sbjct: 99 KQTRAGQRTRFKAFIVVGDSNGHVGLGV-KCSKEVATAIRGAIILAKLSVVPIRRGYWGN 157
Query: 518 R*ESHTTVPCKVXGQXWFPKQFRLIPAP 601
+ TVPCKV G+ R++PAP
Sbjct: 158 KIGKPHTVPCKVTGKCG-SVTVRMVPAP 184
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 157 bits (381), Expect = 1e-38
Identities = 73/96 (76%), Positives = 83/96 (86%)
Frame = +1
Query: 256 LPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSK 435
LP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSK
Sbjct: 79 LPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSK 138
Query: 436 EVATAIRGAIILAKLSVLTSPKKLRGNKIGKPHNRP 543
EVATAIRGAIILAKLSV+ + GNKIGKPH P
Sbjct: 139 EVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVP 174
Score = 49.2 bits (112), Expect = 4e-06
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 3/148 (2%)
Frame = +2
Query: 167 DQKEWVPVTKLGRLVREGKIDKLESIYLFFYQSKNSR---SLISSSARP*MMRFLRSCLY 337
++ +WVPVTKLGRLV + KI KLE IYL K + L+ + + +M+ + +
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMP--VQ 106
Query: 338 RNKHVPDSAHVSRHLLPLATTTVILVWV*SAARKSPLPFEALLSLLSCQF*PVRRSYGVT 517
+ ++ + + V +++ + L PVRR Y
Sbjct: 107 KQTRAGQRTRFKAFVVVGDGNGHVGLGV-KCSKEVATAIRGAIILAKLSVVPVRRGYWGN 165
Query: 518 R*ESHTTVPCKVXGQXWFPKQFRLIPAP 601
+ TVPCKV G+ R++PAP
Sbjct: 166 KIGKPHTVPCKVTGKCG-SVTVRMVPAP 192
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 157 bits (381), Expect = 1e-38
Identities = 73/96 (76%), Positives = 83/96 (86%)
Frame = +1
Query: 256 LPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSK 435
LP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSK
Sbjct: 79 LPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSK 138
Query: 436 EVATAIRGAIILAKLSVLTSPKKLRGNKIGKPHNRP 543
EVATAIRGAIILAKLSV+ + GNKIGKPH P
Sbjct: 139 EVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVP 174
Score = 49.2 bits (112), Expect = 4e-06
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 3/148 (2%)
Frame = +2
Query: 167 DQKEWVPVTKLGRLVREGKIDKLESIYLFFYQSKNSR---SLISSSARP*MMRFLRSCLY 337
++ +WVPVTKLGRLV + KI KLE IYL K + L+ + + +M+ + +
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMP--VQ 106
Query: 338 RNKHVPDSAHVSRHLLPLATTTVILVWV*SAARKSPLPFEALLSLLSCQF*PVRRSYGVT 517
+ ++ + + V +++ + L PVRR Y
Sbjct: 107 KQTRAGQRTRFKAFVVVGDGNGHVGLGV-KCSKEVATAIRGAIILAKLSVVPVRRGYWGN 165
Query: 518 R*ESHTTVPCKVXGQXWFPKQFRLIPAP 601
+ TVPCKV G+ R++PAP
Sbjct: 166 KIGKPHTVPCKVTGKCG-SVTVRMVPAP 192
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 157 bits (381), Expect = 1e-38
Identities = 73/96 (76%), Positives = 83/96 (86%)
Frame = +1
Query: 256 LPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSK 435
LP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSK
Sbjct: 79 LPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSK 138
Query: 436 EVATAIRGAIILAKLSVLTSPKKLRGNKIGKPHNRP 543
EVATAIRGAIILAKLSV+ + GNKIGKPH P
Sbjct: 139 EVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVP 174
Score = 49.2 bits (112), Expect = 4e-06
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 3/148 (2%)
Frame = +2
Query: 167 DQKEWVPVTKLGRLVREGKIDKLESIYLFFYQSKNSR---SLISSSARP*MMRFLRSCLY 337
++ +WVPVTKLGRLV + KI KLE IYL K + L+ + + +M+ + +
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMP--VQ 106
Query: 338 RNKHVPDSAHVSRHLLPLATTTVILVWV*SAARKSPLPFEALLSLLSCQF*PVRRSYGVT 517
+ ++ + + V +++ + L PVRR Y
Sbjct: 107 KQTRAGQRTRFKAFVVVGDGNGHVGLGV-KCSKEVATAIRGAIILAKLSVVPVRRGYWGN 165
Query: 518 R*ESHTTVPCKVXGQXWFPKQFRLIPAP 601
+ TVPCKV G+ R++PAP
Sbjct: 166 KIGKPHTVPCKVTGKCG-SVTVRMVPAP 192
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 157 bits (381), Expect = 1e-38
Identities = 73/96 (76%), Positives = 83/96 (86%)
Frame = +1
Query: 256 LPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSK 435
LP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSK
Sbjct: 79 LPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSK 138
Query: 436 EVATAIRGAIILAKLSVLTSPKKLRGNKIGKPHNRP 543
EVATAIRGAIILAKLSV+ + GNKIGKPH P
Sbjct: 139 EVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVP 174
Score = 49.2 bits (112), Expect = 4e-06
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 3/148 (2%)
Frame = +2
Query: 167 DQKEWVPVTKLGRLVREGKIDKLESIYLFFYQSKNSR---SLISSSARP*MMRFLRSCLY 337
++ +WVPVTKLGRLV + KI KLE IYL K + L+ + + +M+ + +
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMP--VQ 106
Query: 338 RNKHVPDSAHVSRHLLPLATTTVILVWV*SAARKSPLPFEALLSLLSCQF*PVRRSYGVT 517
+ ++ + + V +++ + L PVRR Y
Sbjct: 107 KQTRAGQRTRFKAFVVVGDGNGHVGLGV-KCSKEVATAIRGAIILAKLSVVPVRRGYWGN 165
Query: 518 R*ESHTTVPCKVXGQXWFPKQFRLIPAP 601
+ TVPCKV G+ R++PAP
Sbjct: 166 KIGKPHTVPCKVTGKCG-SVTVRMVPAP 192
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 47.6 bits (108), Expect = 1e-05
Identities = 19/63 (30%), Positives = 40/63 (63%)
Frame = +1
Query: 310 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 489
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 490 TSP 498
P
Sbjct: 209 QVP 211
>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2, SMUBP-2)
[Mesocricetus auratus]
Length = 961
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -3
Query: 356 PARVCFCTGMILRTSSFRDGPRKKSMISNSLIGKKTSK 243
P R FC+G+ +S + PR+KS +S+ L KK K
Sbjct: 43 PTRKVFCSGVNGGSSVTKKKPRRKSNVSDKLRFKKIEK 80
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 29.1 bits (62), Expect = 4.6
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3
Query: 152 HDHGRDHDRVHEDRHGLYLH 93
HDH DHD H D H + H
Sbjct: 320 HDHNHDHDHHHHDGHDHHHH 339
>At1g06470.2 68414.m00686 phosphate translocator-related low
similarity to SP|P52178 Triose phosphate/phosphate
translocator, non-green plastid, chloroplast precursor
(CTPT) {Brassica oleracea},
phosphoenolpyruvate/phosphate translocator precursor
[Mesembryanthemum crystallinum] GI:9295275
Length = 414
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -3
Query: 539 RLCGFPILLPRNFFGLVRTDSLARIIAPRMAVATSLLHFTPKP 411
R C +LL + FGL +AP MA+AT LL P
Sbjct: 240 RWCMTQVLLQKETFGLKNPFIFMSCVAPVMAIATGLLSLLLDP 282
>At1g06470.1 68414.m00685 phosphate translocator-related low
similarity to SP|P52178 Triose phosphate/phosphate
translocator, non-green plastid, chloroplast precursor
(CTPT) {Brassica oleracea},
phosphoenolpyruvate/phosphate translocator precursor
[Mesembryanthemum crystallinum] GI:9295275
Length = 414
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -3
Query: 539 RLCGFPILLPRNFFGLVRTDSLARIIAPRMAVATSLLHFTPKP 411
R C +LL + FGL +AP MA+AT LL P
Sbjct: 240 RWCMTQVLLQKETFGLKNPFIFMSCVAPVMAIATGLLSLLLDP 282
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 376 AFVAIGDNNGHIGLGVKCSKE 438
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 28.3 bits (60), Expect = 8.0
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -3
Query: 461 APRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCFCTGMILRTSSFR 303
A A+ H +P + P L P N R+R A CF +G + R + R
Sbjct: 184 AAERALVAMTTHVSPALLLPKLRPCLKNKSPRIRAKASACF-SGCVPRLEAAR 235
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,112,523
Number of Sequences: 28952
Number of extensions: 361895
Number of successful extensions: 893
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2314656624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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