Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30139.Seq
(697 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g22030.2 68418.m02564 ubiquitin-specific protease 8, putative... 58 6e-09
At5g22030.1 68418.m02563 ubiquitin-specific protease 8, putative... 58 6e-09
At1g32850.1 68414.m04048 ubiquitin carboxyl-terminal hydrolase f... 54 7e-08
At4g10570.1 68417.m01730 ubiquitin carboxyl-terminal hydrolase f... 53 2e-07
At4g10590.2 68417.m01733 ubiquitin carboxyl-terminal hydrolase f... 52 3e-07
At4g10590.1 68417.m01732 ubiquitin carboxyl-terminal hydrolase f... 52 3e-07
At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase f... 52 5e-07
At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15) ... 51 8e-07
At2g32780.1 68415.m04013 ubiquitin-specific protease 1, putative... 48 4e-06
At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative... 48 8e-06
At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase f... 47 1e-05
At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f... 47 1e-05
At5g10790.1 68418.m01254 ubiquitin-specific protease 22 (UBP22) ... 46 2e-05
At3g14400.1 68416.m01822 ubiquitin-specific protease 25 (UBP25) ... 46 3e-05
At2g22310.1 68415.m02647 ubiquitin-specific protease 4 (UBP4) id... 44 1e-04
At4g39910.1 68417.m05653 ubiquitin-specific protease 3 (UBP3) id... 44 1e-04
At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ... 42 3e-04
At5g57990.1 68418.m07255 ubiquitin-specific protease 23, putativ... 41 7e-04
At1g04860.1 68414.m00482 ubiquitin-specific protease 2 (UBP2) id... 40 0.002
At4g17895.1 68417.m02667 ubiquitin-specific protease 20, putativ... 36 0.026
At3g49600.1 68416.m05421 ubiquitin-specific protease 26 (UBP26) ... 36 0.034
At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21) ... 35 0.059
At5g06600.2 68418.m00746 ubiquitin-specific protease 12 (UBP12) ... 30 1.7
At5g06600.1 68418.m00745 ubiquitin-specific protease 12 (UBP12) ... 30 1.7
At3g11910.1 68416.m01460 ubiquitin-specific protease, putative s... 30 1.7
At1g53300.1 68414.m06041 thioredoxin family protein contains Pfa... 28 5.1
At1g32640.1 68414.m04026 basic helix-loop-helix (bHLH) protein (... 27 9.0
>At5g22030.2 68418.m02564 ubiquitin-specific protease 8, putative
(UBP8) similar to ubiquitin-specific protease 8 partial
sequence GI:11993469 [Arabidopsis thaliana]
Length = 622
Score = 58.0 bits (134), Expect = 6e-09
Identities = 33/106 (31%), Positives = 50/106 (47%)
Frame = +3
Query: 309 VSLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHELLFS 488
VSL CL AF + + L D+M+ C CK+ R +K + LP +L +HLKRF +
Sbjct: 473 VSLFKCLEAFLTEEPLGPDDMWYCPGCKEHRQAIKKLDLWRLPEILVIHLKRFSYSRFMK 532
Query: 489 AKVXXXXXXXXTIWT*RLTRTKSAPRXVSRYSLXAVISHMGTVGGG 626
K+ + + RY L A+ +H G++GGG
Sbjct: 533 NKLEAYVDFPLDNLDLSSYISYKNGQTTYRYMLYAISNHYGSMGGG 578
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = +1
Query: 67 SIISDVFXGKLLSAVQCLICDRVSTRIETFQDLSLPIP 180
SII DV G+ S + C IC +VS + F LSLP+P
Sbjct: 172 SIIVDVCQGQYKSTLVCPICKKVSVMFDPFMYLSLPLP 209
>At5g22030.1 68418.m02563 ubiquitin-specific protease 8, putative
(UBP8) similar to ubiquitin-specific protease 8 partial
sequence GI:11993469 [Arabidopsis thaliana]
Length = 622
Score = 58.0 bits (134), Expect = 6e-09
Identities = 33/106 (31%), Positives = 50/106 (47%)
Frame = +3
Query: 309 VSLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHELLFS 488
VSL CL AF + + L D+M+ C CK+ R +K + LP +L +HLKRF +
Sbjct: 473 VSLFKCLEAFLTEEPLGPDDMWYCPGCKEHRQAIKKLDLWRLPEILVIHLKRFSYSRFMK 532
Query: 489 AKVXXXXXXXXTIWT*RLTRTKSAPRXVSRYSLXAVISHMGTVGGG 626
K+ + + RY L A+ +H G++GGG
Sbjct: 533 NKLEAYVDFPLDNLDLSSYISYKNGQTTYRYMLYAISNHYGSMGGG 578
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = +1
Query: 67 SIISDVFXGKLLSAVQCLICDRVSTRIETFQDLSLPIP 180
SII DV G+ S + C IC +VS + F LSLP+P
Sbjct: 172 SIIVDVCQGQYKSTLVCPICKKVSVMFDPFMYLSLPLP 209
>At1g32850.1 68414.m04048 ubiquitin carboxyl-terminal hydrolase family
protein similar to ubiquitin-specific protease UBP5
[Arabidopsis thaliana] GI:6648604; contains Pfam profile
PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 892
Score = 54.4 bits (125), Expect = 7e-08
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Frame = +3
Query: 309 VSLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHELLFS 488
+SL CL AF + + L D+M+ C CK+ R K + LP +L HLKRF + F
Sbjct: 733 ISLFSCLEAFLAEEPLGPDDMWYCPGCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYFK 792
Query: 489 AKVXXXXXXXXTIWT*RLTR-TKSAPRXVSRYSLXAVISHMGTVGGG 626
K+ I L++ K+ Y L A+ +H G +GGG
Sbjct: 793 NKIDTLVNFH--IHDLDLSKYVKNEDGQSYLYELYAISNHYGGLGGG 837
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +1
Query: 67 SIISDVFXGKLLSAVQCLICDRVSTRIETFQDLSLPIPS 183
S+I DVF G+ S + C C ++S + F LSLP+PS
Sbjct: 443 SVIVDVFQGQYKSTLVCPDCGKISITFDPFMYLSLPLPS 481
>At4g10570.1 68417.m01730 ubiquitin carboxyl-terminal hydrolase family
protein similar to ubiquitin-specific protease UBP5
[Arabidopsis thaliana] GI:6648604; contains Pfam profile
PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 923
Score = 53.2 bits (122), Expect = 2e-07
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Frame = +3
Query: 309 VSLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHELLFS 488
+SL CL AF + + L D+M+ C CK+ R K + LP +L HLKRF +
Sbjct: 748 ISLFSCLEAFLAEEPLGPDDMWFCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYLK 807
Query: 489 AKV-XXXXXXXXTIWT*RLTRTKSAPRXVSRYSLXAVISHMGTVGGG 626
K+ + + + K+ + Y L AV +H G +GGG
Sbjct: 808 NKIDTFVNFPVHDLDLSKYVKNKNGQSYL--YELYAVSNHYGGLGGG 852
Score = 36.3 bits (80), Expect = 0.019
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +1
Query: 67 SIISDVFXGKLLSAVQCLICDRVSTRIETFQDLSLPIPS 183
S+I DV G+ S + C +C ++S + F LS+P+PS
Sbjct: 446 SVIVDVCQGQYKSTLVCPVCGKISITFDPFMYLSVPLPS 484
>At4g10590.2 68417.m01733 ubiquitin carboxyl-terminal hydrolase family
protein similar to ubiquitin-specific protease UBP5
[Arabidopsis thaliana] GI:6648604; contains Pfam profile
PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 910
Score = 52.4 bits (120), Expect = 3e-07
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Frame = +3
Query: 309 VSLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHELLFS 488
+SL CL AF + + L D+M+ C CK+ R K + LP +L HLKRF +
Sbjct: 747 ISLFSCLEAFLAEEPLGPDDMWFCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYLK 806
Query: 489 AKV-XXXXXXXXTIWT*RLTRTKSAPRXVSRYSLXAVISHMGTVGGG 626
K+ + + + K+ + Y L AV +H G +GGG
Sbjct: 807 NKIDTFVNFPVHDLDLSKYVKNKNDQSYL--YELYAVSNHYGGLGGG 851
Score = 34.7 bits (76), Expect = 0.059
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 67 SIISDVFXGKLLSAVQCLICDRVSTRIETFQDLSLPIPS 183
S+I DV G+ S + C C ++S + F LS+P+PS
Sbjct: 445 SVIVDVCQGQYKSTLVCPACGKISITFDPFMYLSVPLPS 483
>At4g10590.1 68417.m01732 ubiquitin carboxyl-terminal hydrolase family
protein similar to ubiquitin-specific protease UBP5
[Arabidopsis thaliana] GI:6648604; contains Pfam profile
PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 910
Score = 52.4 bits (120), Expect = 3e-07
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Frame = +3
Query: 309 VSLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHELLFS 488
+SL CL AF + + L D+M+ C CK+ R K + LP +L HLKRF +
Sbjct: 747 ISLFSCLEAFLAEEPLGPDDMWFCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYLK 806
Query: 489 AKV-XXXXXXXXTIWT*RLTRTKSAPRXVSRYSLXAVISHMGTVGGG 626
K+ + + + K+ + Y L AV +H G +GGG
Sbjct: 807 NKIDTFVNFPVHDLDLSKYVKNKNDQSYL--YELYAVSNHYGGLGGG 851
Score = 34.7 bits (76), Expect = 0.059
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 67 SIISDVFXGKLLSAVQCLICDRVSTRIETFQDLSLPIPS 183
S+I DV G+ S + C C ++S + F LS+P+PS
Sbjct: 445 SVIVDVCQGQYKSTLVCPACGKISITFDPFMYLSVPLPS 483
>At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 672
Score = 51.6 bits (118), Expect = 5e-07
Identities = 23/58 (39%), Positives = 33/58 (56%)
Frame = +3
Query: 297 YGPVVSLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFR 470
+G VSL++CL F + + L+GDN+Y C RC K I P +L + LKRF+
Sbjct: 330 HGDAVSLEECLDQFTAKEWLQGDNLYKCDRCDDYVKACKRLSIRCAPNILTIALKRFQ 387
>At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15)
almost identical to ubiquitin-specific protease 15
GI:11993475 [Arabidopsis thaliana], 7 amino acid
difference
Length = 924
Score = 50.8 bits (116), Expect = 8e-07
Identities = 38/107 (35%), Positives = 48/107 (44%)
Frame = +3
Query: 297 YGPVVSLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHE 476
YG V SLQD L F ++L G+NMY CSRC K I P +L + LKRF+ E
Sbjct: 594 YGWVESLQDALTQFTRPEDLDGENMYRCSRCAGYVRARKELSIHEAPNILTIVLKRFQ-E 652
Query: 477 LLFSAKVXXXXXXXXTIWT*RLTRTKSAPRXVSRYSLXAVISHMGTV 617
+ +TRT P Y L AVI H+ T+
Sbjct: 653 GRYGKINKCISFPEMLDMIPFMTRTGDVP---PLYMLYAVIVHLDTL 696
Score = 37.1 bits (82), Expect = 0.011
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +1
Query: 67 SIISDVFXGKLLSAVQCLICDRVSTRIETFQDLSLPI 177
+++ +F G+L S V+CL CD S R E DL+L I
Sbjct: 557 TLVQHMFGGRLRSKVKCLRCDHESERYENIMDLTLEI 593
>At2g32780.1 68415.m04013 ubiquitin-specific protease 1, putative
(UBP1) similar to GI:11993461
Length = 1083
Score = 48.4 bits (110), Expect = 4e-06
Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +1
Query: 10 NSARAKSG--SSGDGSNVKYRSIISDVFXGKLLSAVQCLICDRVSTRIETFQDLSLPIPS 183
+S R K G S D S + ++I VF G++ S V CL C S E F DLSLP+PS
Sbjct: 303 SSLRKKLGVSDSNDSSTYQKPTLIDSVFGGEISSTVSCLECGHFSKVYEPFMDLSLPVPS 362
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 309 VSLQDCLAAFFSADELKGDNMYSCSRCKK 395
VS+ CLA F + L DN + C C K
Sbjct: 799 VSVDRCLAQFTKHEILSEDNAWHCENCSK 827
>At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative
(UBP5) similar to GI:6648604
Length = 924
Score = 47.6 bits (108), Expect = 8e-06
Identities = 36/109 (33%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Frame = +3
Query: 309 VSLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHELLFS 488
+SL CL AF + L D M+ C +C + R K + LP VL +HLKRF + S
Sbjct: 768 LSLYACLEAFLREEPLVPDEMWFCPQCNERRQASKKLDLWRLPEVLVIHLKRFSYSR--S 825
Query: 489 AKVXXXXXXXXTIWT*RLTRTKSAPRXVSR---YSLXAVISHMGTVGGG 626
K I LT+ A + +S+ Y L A+ +H G +G G
Sbjct: 826 MKHKLETFVNFPIHDLDLTK-YVANKNLSQPQLYELYALTNHYGGMGSG 873
Score = 35.5 bits (78), Expect = 0.034
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +1
Query: 67 SIISDVFXGKLLSAVQCLICDRVSTRIETFQDLSLPI 177
SII DV G+ S + C IC++VS + F LSLP+
Sbjct: 459 SIIVDVCQGQYKSTLVCPICNKVSVTFDPFMYLSLPL 495
>At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 16 (UBP16)
[Arabidopsis thaliana] GI:11993477; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 731
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/59 (38%), Positives = 34/59 (57%)
Frame = +3
Query: 300 GPVVSLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHE 476
G + SL++ LA F + + L G+N Y C RCK + K I+ P +L V LKRF+ +
Sbjct: 483 GDIGSLEEALAQFTAYEVLDGENRYFCGRCKSYQKAKKKLMILEGPNILTVVLKRFQSD 541
>At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 631
Score = 46.8 bits (106), Expect = 1e-05
Identities = 22/58 (37%), Positives = 31/58 (53%)
Frame = +3
Query: 297 YGPVVSLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFR 470
+G SL++CL F + + L GDNMY C RC K I P +L + LKR++
Sbjct: 324 HGDAGSLEECLDQFTAEEWLHGDNMYKCDRCSDYVKACKRLTIRRAPNILTIALKRYQ 381
Score = 33.5 bits (73), Expect = 0.14
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 67 SIISDVFXGKLLSAVQCLICDRVSTRIETFQDL 165
++I +F G L S VQC +C+ VS + E DL
Sbjct: 287 TLIQYIFGGLLQSQVQCTVCNHVSDQYENMMDL 319
>At5g10790.1 68418.m01254 ubiquitin-specific protease 22 (UBP22)
almost identical to ubiquitin-specific protease 22
GI:11993484 [Arabidopsis thaliana], one amino acid
difference
Length = 557
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/56 (37%), Positives = 30/56 (53%)
Frame = +3
Query: 312 SLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHEL 479
+L CL F +++L D +C C + R K I LP +LC+H+KRF H L
Sbjct: 362 TLSGCLDFFTRSEKLGPDQKLNCQSCGEKRESSKQMSIRRLPLLLCLHVKRFEHSL 417
Score = 31.9 bits (69), Expect = 0.42
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +1
Query: 52 NVKYRSIISDVFXGKLLSAVQCLICDRVSTRIETFQDLSLPIPSREHLAVLRCQQ 216
N + + I F G L S V C C ST + F D+SL + S + C++
Sbjct: 293 NEECQCITHKAFSGLLRSDVTCTTCGSTSTTYDPFIDISLTLDSMNGFSPADCRK 347
>At3g14400.1 68416.m01822 ubiquitin-specific protease 25 (UBP25)
similar to GI:11993490
Length = 661
Score = 45.6 bits (103), Expect = 3e-05
Identities = 28/100 (28%), Positives = 45/100 (45%)
Frame = +3
Query: 312 SLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHELLFSA 491
S+++ L FF ++ L G+N Y C C+KL K I+ P +L + LKRF +F
Sbjct: 191 SVKESLQKFFQSEILDGNNKYRCESCEKLVTARKQMSILQAPNILVIQLKRFGG--IFGG 248
Query: 492 KVXXXXXXXXTIWT*RLTRTKSAPRXVSRYSLXAVISHMG 611
K+ + +K++ Y L +I H G
Sbjct: 249 KIDKAISFGEILVLSNF-MSKASKDPQPEYKLFGIIVHSG 287
Score = 34.7 bits (76), Expect = 0.059
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 67 SIISDVFXGKLLSAVQCLICDRVSTRIETFQDLSLPI 177
S++ ++F G L S V+CL C S + + D+SL I
Sbjct: 150 SVVKEIFGGALQSQVKCLSCGAESNKADEIMDISLEI 186
>At2g22310.1 68415.m02647 ubiquitin-specific protease 4 (UBP4)
identical to GI:2347100
Length = 365
Score = 44.0 bits (99), Expect = 1e-04
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Frame = +3
Query: 312 SLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRH-ELLFS 488
S+ CL F S + L ++ + C +C L+ K I P +L +HLKRF++ E L
Sbjct: 206 SITSCLKNFSSTETLHAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYMEQLGR 265
Query: 489 AKVXXXXXXXXTIWT*RLTRTKSAPRXVS-RYSLXAVISHMGT 614
K ++ L + + V YSL AV+ H+G+
Sbjct: 266 YK----KLSYRVVFPLELKLSNTVDEYVDIEYSLFAVVVHVGS 304
Score = 35.9 bits (79), Expect = 0.026
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = +1
Query: 73 ISDVFXGKLLSAVQCLICDRVSTRIETFQDLSLPIPSREHLAVLRCQQPMLNHHAAHNAQ 252
+ +F G L + +CL C+ V+ R ETF DLSL I ++ ++ C + + H A+
Sbjct: 167 VHKIFQGILTNETRCLRCETVTARDETFLDLSLDI--EQNSSITSCLKNFSSTETLH-AE 223
Query: 253 D 255
D
Sbjct: 224 D 224
>At4g39910.1 68417.m05653 ubiquitin-specific protease 3 (UBP3)
identical to GI:2347098
Length = 371
Score = 43.6 bits (98), Expect = 1e-04
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Frame = +3
Query: 312 SLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRH--ELLF 485
S+ CL F S + L ++ + C +C L+ K I P +L +HLKRF++ +L
Sbjct: 211 SITSCLKNFSSTETLHAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYIEQLGR 270
Query: 486 SAKVXXXXXXXXTIWT*RLTRTKSAPRXVSRYSLXAVISHMGT 614
K+ + +L+ T P YSL AV+ H+G+
Sbjct: 271 YKKLSYRVVFPLEL---KLSNTVE-PYADVEYSLFAVVVHVGS 309
Score = 36.7 bits (81), Expect = 0.015
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +1
Query: 73 ISDVFXGKLLSAVQCLICDRVSTRIETFQDLSLPIPSREHLAVLRCQQPMLNHHAAHNAQ 252
+ ++F G L + +CL C+ V+ R ETF DLSL I ++ ++ C + + H A+
Sbjct: 172 VHNIFQGILTNETRCLRCETVTARDETFLDLSLDI--EQNSSITSCLKNFSSTETLH-AE 228
Query: 253 D 255
D
Sbjct: 229 D 229
>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
(UBP16) similar to ubiquitin-specific protease 16
GI:11993477 [Arabidopsis thaliana]
Length = 1008
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/57 (36%), Positives = 27/57 (47%)
Frame = +3
Query: 300 GPVVSLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFR 470
G + +L D L F + L G+N Y C CK K I P VL + LKRF+
Sbjct: 699 GDISTLDDALRRFTRTEILDGENKYRCGSCKSYERAKKKLKITEPPNVLTIALKRFQ 755
>At5g57990.1 68418.m07255 ubiquitin-specific protease 23, putative
(UBP23) identical to GI:11993486
Length = 859
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = +1
Query: 28 SGSSGDGSNVKYRSIISDVFXGKLLSAVQCLICDRVSTRIETFQDLSLPIPSREHL 195
SG + S+ RS++ +F G L S V+C C S + + F DLSL I + L
Sbjct: 212 SGVPSESSDAYRRSLVHKIFGGSLRSQVKCEQCSHCSNKFDPFLDLSLDISKADSL 267
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 312 SLQDCLAAFFSADEL-KGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRF 467
SLQ L+ F + + L G +Y C RCK+ K + P VL VHLKRF
Sbjct: 266 SLQRALSRFTAVELLDNGAKVYQCERCKQKVKAKKQLTVSKAPYVLTVHLKRF 318
>At1g04860.1 68414.m00482 ubiquitin-specific protease 2 (UBP2)
identical to GI:11993463
Length = 961
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/60 (36%), Positives = 32/60 (53%)
Frame = +1
Query: 10 NSARAKSGSSGDGSNVKYRSIISDVFXGKLLSAVQCLICDRVSTRIETFQDLSLPIPSRE 189
++ R K G S + K ++I VF G+ S V C+ C S E F DLSLP+P ++
Sbjct: 332 SALRKKRGVSDNDE--KSTTLIESVFGGETSSIVSCMECGHSSKVYEPFLDLSLPVPFKK 389
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 309 VSLQDCLAAFFSADELKGDNMYSCSRCKK 395
VS++ CL F + L DN ++C C K
Sbjct: 709 VSVERCLGHFTKHEILSDDNAWNCENCSK 737
Score = 28.3 bits (60), Expect = 5.1
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +3
Query: 399 RNGVKLSGIVVLPXVLCVHLKRFRHELLFS-AKVXXXXXXXXTIWT*RLTRTKSAPRXVS 575
R+ K I P VL +HLKRF +L +K+ I + ++ +
Sbjct: 830 RDATKKVLINKAPPVLTIHLKRFSQDLRGRLSKLNGHVAFKEVIDLRQYMDSRCSGEDPP 889
Query: 576 RYSLXAVISHMGTVGGG 626
Y L ++ H GT+ GG
Sbjct: 890 VYRLAGLVEHSGTMRGG 906
>At4g17895.1 68417.m02667 ubiquitin-specific protease 20, putative
(UBP20) identical to ubiquitin-specific protease 20
GI:11993480 [Arabidopsis thaliana]
Length = 695
Score = 35.9 bits (79), Expect = 0.026
Identities = 26/102 (25%), Positives = 42/102 (41%)
Frame = +3
Query: 306 VVSLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHELLF 485
V +L L +F ++L D +C C + + K + LP V HLKRF++ L+
Sbjct: 329 VDTLGSALESFTRVEKL--DEQLTCDNCNEKVSKEKQLLLDKLPLVATFHLKRFKNNGLY 386
Query: 486 SAKVXXXXXXXXTIWT*RLTRTKSAPRXVSRYSLXAVISHMG 611
K+ I R ++Y L A++ H G
Sbjct: 387 MEKIYKHVKIPLEIDLQPYMRNIQENEVSTKYHLYALVEHFG 428
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +1
Query: 79 DVFXGKLLSAVQCLICDRVSTRIETFQDLSLPI 177
DVF G+L+S ++C CD VS E LSL I
Sbjct: 294 DVFSGRLISGLRCCNCDYVSETYEKSVGLSLEI 326
>At3g49600.1 68416.m05421 ubiquitin-specific protease 26 (UBP26)
similar to GI:11993492; RNA binding protein - Homo
sapiens, EMBL:AB016089 (N-terminus), several ubiquitin
carboxyl-terminal hydrolases from aa pos. 712
Length = 1067
Score = 35.5 bits (78), Expect = 0.034
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +3
Query: 312 SLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKR 464
SL L + S ++L GDN Y C C + + + LP V+ LKR
Sbjct: 253 SLDASLNDYLSLEQLNGDNQYFCGSCNARVDATRCIKLRTLPPVITFQLKR 303
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +1
Query: 49 SNVKYRSIISDVFXGKLLSAVQCLICDR---VSTRIETFQDLSLPIPSREHL 195
S VK ++I+ D+F G + C C R S+++E F L L + + L
Sbjct: 203 SGVKAKTIVQDLFSGSVSHVTTCSKCGRDSEASSKMEDFYALELNVKGLKSL 254
>At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21)
identical to ubiquitin-specific protease 21 GI:11993482
[Arabidopsis thaliana]
Length = 732
Score = 34.7 bits (76), Expect = 0.059
Identities = 25/102 (24%), Positives = 42/102 (41%)
Frame = +3
Query: 306 VVSLQDCLAAFFSADELKGDNMYSCSRCKKLRNGVKLSGIVVLPXVLCVHLKRFRHELLF 485
V +L L +F ++L ++ +C CK+ K LP V HLKRF ++ +
Sbjct: 322 VNTLWKALESFTCVEKL--EDQLTCDNCKEKVTKEKQLRFDKLPPVATFHLKRFTNDGVT 379
Query: 486 SAKVXXXXXXXXTIWT*RLTRTKSAPRXVSRYSLXAVISHMG 611
K+ + + P +RY L A + H+G
Sbjct: 380 MEKIFDHIEFPLELDLSPFMSSNHDPEVSTRYHLYAFVEHIG 421
>At5g06600.2 68418.m00746 ubiquitin-specific protease 12 (UBP12)
almost identical to ubiquitin-specific protease 12
GI:11993471 [Arabidopsis thaliana], one amino acid
difference
Length = 1115
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 73 ISDVFXGKLLSAVQCLICDRVSTRIETFQDLSLPI 177
I +F G ++ ++C+ D STR E+F DL L +
Sbjct: 305 IQQLFEGHHMNYIECINVDFKSTRKESFYDLQLDV 339
>At5g06600.1 68418.m00745 ubiquitin-specific protease 12 (UBP12)
almost identical to ubiquitin-specific protease 12
GI:11993471 [Arabidopsis thaliana], one amino acid
difference
Length = 1116
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 73 ISDVFXGKLLSAVQCLICDRVSTRIETFQDLSLPI 177
I +F G ++ ++C+ D STR E+F DL L +
Sbjct: 306 IQQLFEGHHMNYIECINVDFKSTRKESFYDLQLDV 340
>At3g11910.1 68416.m01460 ubiquitin-specific protease, putative
strong similarity to ubiquitin-specific protease 12
(UBP12) [Arabidopsis thaliana] GI:11993471; contains
Pfam profiles PF00443: Ubiquitin carboxyl-terminal
hydrolase, PF00917: MATH domain
Length = 1115
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 73 ISDVFXGKLLSAVQCLICDRVSTRIETFQDLSLPI 177
I +F G ++ ++C+ D STR E+F DL L +
Sbjct: 305 IQKLFEGHHMNYIECINVDYKSTRKESFYDLQLDV 339
>At1g53300.1 68414.m06041 thioredoxin family protein contains Pfam
profiles PF00085: Thioredoxin, PF00515: TPR Domain;
similar to tetratricopeptide repeat protein 2
(GI:7248701) [Drosophila melanogaster]; similar to DnaJ
homolog subfamily C member 7 (Tetratricopeptide repeat
protein 2) (TPR repeat protein 2) (Swiss-Prot:Q99615)
[Homo sapiens]
Length = 699
Score = 28.3 bits (60), Expect = 5.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 239 AAWWFSMGCWQRSTAKCSR 183
AA WF +G W+RS C++
Sbjct: 506 AACWFKLGMWERSIEDCNQ 524
>At1g32640.1 68414.m04026 basic helix-loop-helix (bHLH) protein
(RAP-1) identical to bHLH protein GB:CAA67885 GI:1465368
from [Arabidopsis thaliana]
Length = 623
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 322 TVWPPSSAPTNSKATTCTAAPA 387
T+WPP+S T + T T PA
Sbjct: 33 TLWPPASTTTTTATTETTPTPA 54
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,158,062
Number of Sequences: 28952
Number of extensions: 226629
Number of successful extensions: 661
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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