Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30137.Seq
(875 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g07890.1 68418.m00910 myosin heavy chain-related contains wea... 31 0.76
At1g05320.1 68414.m00539 myosin-related similar to non-muscle my... 31 1.3
At3g28770.1 68416.m03591 expressed protein 30 2.3
At1g04550.2 68414.m00448 auxin-responsive protein / indoleacetic... 30 2.3
At1g04550.1 68414.m00447 auxin-responsive protein / indoleacetic... 30 2.3
At3g25440.1 68416.m03163 group II intron splicing factor CRS1-re... 29 3.1
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 29 4.1
At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family... 29 4.1
At5g44310.2 68418.m05424 late embryogenesis abundant domain-cont... 29 5.4
At5g44310.1 68418.m05423 late embryogenesis abundant domain-cont... 29 5.4
At4g09460.1 68417.m01557 myb family transcription factor 29 5.4
At3g02930.1 68416.m00288 expressed protein ; expression support... 29 5.4
At1g49160.2 68414.m05512 protein kinase family protein contains ... 29 5.4
At1g49160.1 68414.m05511 protein kinase family protein contains ... 29 5.4
At3g53000.1 68416.m05842 F-box family protein / SKP1 interacting... 28 7.1
At3g28510.1 68416.m03561 AAA-type ATPase family protein contains... 28 7.1
At3g02860.2 68416.m00279 expressed protein 28 7.1
At3g02860.1 68416.m00278 expressed protein 28 7.1
At1g58270.1 68414.m06628 meprin and TRAF homology domain-contain... 28 7.1
At5g23760.1 68418.m02790 heavy-metal-associated domain-containin... 28 9.4
At1g77460.1 68414.m09020 C2 domain-containing protein / armadill... 28 9.4
At1g35515.1 68414.m04409 myb family transcription factor (MYB8) ... 28 9.4
>At5g07890.1 68418.m00910 myosin heavy chain-related contains weak
similarity to Myosin heavy chain, cardiac muscle alpha
isoform (MyHC-alpha) (Alpha isomyosin) (Fragment)
(Swiss-Prot:P04460) [Oryctolagus cuniculus]
Length = 409
Score = 31.5 bits (68), Expect = 0.76
Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Frame = +2
Query: 179 ERETIQDNIESNASCWQRAISHNLCYSKDDTKDYDVAAKSQLKKIQKIWVRENYKAMDKA 358
ER +D NA C+ +SH L S + +D K +L+ Q + + + + M K
Sbjct: 264 ERLESEDEQPLNAMCFFAELSHVLPVSNEVRNCFDAIMK-KLELSQNVNLIDKVEGMGKQ 322
Query: 359 KAEEENTEKRSQNLDEAKKILLQED-----PSLPKATVVKICETTEHRGQRICI 505
+ E+ K+ + + +K+ +E+ + + C E R +R+CI
Sbjct: 323 IHQHEDVVKQLKEELKQEKLKAKEEAEDLTQEMAELRYKMTCLLDEERNRRVCI 376
>At1g05320.1 68414.m00539 myosin-related similar to non-muscle
myosin II heavy chain (GI:19879404) [Loligo pealei];
ESTs gb|AA042402,gb|ATTS1380 come from this gene
Length = 828
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +2
Query: 332 ENYKA-MDKAKAEEENTEKRSQNLDEAKKILLQEDPSLPKATVVKICETTEHRGQR 496
EN A M+K K+ EE EK+++ +DEA ++ + +L K + +K+ +T E R
Sbjct: 289 ENLNAVMEKLKSSEERLEKQAREIDEATTRSIELE-ALHKHSELKVQKTMEDFSSR 343
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/81 (23%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Frame = +2
Query: 179 ERETIQDNIESNASCWQRAISHNLCYSKDDTKDYDVAAKSQLKKIQKI--WVRENYKAMD 352
++E+ N++ + +++ L +D+ K+ + S+LK+ K +E+ +
Sbjct: 948 KKESKNSNMKKKEEDKKEYVNNELKKQEDNKKETTKSENSKLKEENKDNKEKKESEDSAS 1007
Query: 353 KAKAEEENTEKRSQNLDEAKK 415
K + ++E EK+S+ +EAKK
Sbjct: 1008 KNREKKEYEEKKSKTKEEAKK 1028
>At1g04550.2 68414.m00448 auxin-responsive protein / indoleacetic
acid-induced protein 12 (IAA12) identical to SP|Q38830
Auxin-responsive protein IAA12 (Indoleacetic
acid-induced protein 12) {Arabidopsis thaliana}
Length = 239
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 335 NYKAMDKAKAEEENTEKRSQNLDEAKKILLQEDPSLPKATVVKI 466
N +AM A+AEE + EK+ DE K + ++ +P + VK+
Sbjct: 86 NNQAMKAARAEEGDGEKKVVKNDELKDVSMKVNPKVQGLGFVKV 129
>At1g04550.1 68414.m00447 auxin-responsive protein / indoleacetic
acid-induced protein 12 (IAA12) identical to SP|Q38830
Auxin-responsive protein IAA12 (Indoleacetic
acid-induced protein 12) {Arabidopsis thaliana}
Length = 173
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 335 NYKAMDKAKAEEENTEKRSQNLDEAKKILLQEDPSLPKATVVKI 466
N +AM A+AEE + EK+ DE K + ++ +P + VK+
Sbjct: 86 NNQAMKAARAEEGDGEKKVVKNDELKDVSMKVNPKVQGLGFVKV 129
>At3g25440.1 68416.m03163 group II intron splicing factor
CRS1-related contains weak similarity to CRS1 [Zea mays]
gi|9837550|gb|AAG00595
Length = 380
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 332 ENYKAMDKAKAE-EENTEKRSQNLDEAKKILLQ 427
E++ + KAK+E EEN + +S N DE K+ L+
Sbjct: 338 EDFGDLGKAKSEGEENDDDKSPNFDEVDKMFLR 370
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 29.1 bits (62), Expect = 4.1
Identities = 10/45 (22%), Positives = 26/45 (57%)
Frame = +2
Query: 278 YDVAAKSQLKKIQKIWVRENYKAMDKAKAEEENTEKRSQNLDEAK 412
Y++ K + + W++++ ++M+ +EE+ E+R N+ + K
Sbjct: 650 YEIERKGSRENADRTWLKKHAESMELELDDEESEEERVDNVRQRK 694
>At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family
protein
Length = 635
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 800 CTSGKASSLRMASHHLVVRVQSIPQ*SAVSS*PPGAFFPS 681
CT+ A+S AS H + P +A + PPG FFPS
Sbjct: 558 CTACGATSSSSASRHFTFNGATSPPSAATT--PPGLFFPS 595
>At5g44310.2 68418.m05424 late embryogenesis abundant
domain-containing protein / LEA domain-containing
protein low similarity to 51 kDa seed maturation protein
[Glycine max] GI:414977; contains Pfam profile PF02987:
Late embryogenesis abundant protein
Length = 331
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/79 (21%), Positives = 38/79 (48%)
Frame = +2
Query: 260 KDDTKDYDVAAKSQLKKIQKIWVRENYKAMDKAKAEEENTEKRSQNLDEAKKILLQEDPS 439
K+ TKDY AK ++ + + Y+ +KAK + + ++++++ E K + E S
Sbjct: 141 KEKTKDYAEEAKDKVNEGASRAADKAYETKEKAKDKAYDVKEKTKDFAEETKEKVNEGAS 200
Query: 440 LPKATVVKICETTEHRGQR 496
+ E T++ ++
Sbjct: 201 RAADKAYDVKEKTKNYAEQ 219
>At5g44310.1 68418.m05423 late embryogenesis abundant
domain-containing protein / LEA domain-containing
protein low similarity to 51 kDa seed maturation protein
[Glycine max] GI:414977; contains Pfam profile PF02987:
Late embryogenesis abundant protein
Length = 295
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/79 (21%), Positives = 38/79 (48%)
Frame = +2
Query: 260 KDDTKDYDVAAKSQLKKIQKIWVRENYKAMDKAKAEEENTEKRSQNLDEAKKILLQEDPS 439
K+ TKDY AK ++ + + Y+ +KAK + + ++++++ E K + E S
Sbjct: 105 KEKTKDYAEEAKDKVNEGASRAADKAYETKEKAKDKAYDVKEKTKDFAEETKEKVNEGAS 164
Query: 440 LPKATVVKICETTEHRGQR 496
+ E T++ ++
Sbjct: 165 RAADKAYDVKEKTKNYAEQ 183
>At4g09460.1 68417.m01557 myb family transcription factor
Length = 236
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 454 CCENM*NN*TPWSEDMHQRWVHRLRRQGKSLAFLTLRDGTGYLQC 588
CCE N W+++ QR V +R G+ + +L G L+C
Sbjct: 6 CCEKAHTNKGAWTKEEDQRLVDYIRNHGEG-CWRSLPKSAGLLRC 49
>At3g02930.1 68416.m00288 expressed protein ; expression supported
by MPSS
Length = 806
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +2
Query: 266 DTKDYDVAAKSQLKKIQKIWV---RENYKAMDKAKAEEENTEKRSQNLDEA 409
+++ V K LKK ++ E KA+D+ K + E+ S+ LDEA
Sbjct: 84 ESQPQSVQIKEDLKKANELIASLENEKAKALDQLKEARKEAEEASEKLDEA 134
>At1g49160.2 68414.m05512 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 557
Score = 28.7 bits (61), Expect = 5.4
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Frame = +2
Query: 179 ERETIQDNIESNASCWQ-RAISHNL----CYSKDDTKDYDVAAKSQLKKIQKIWVRENYK 343
+ ++ +DN ++ AS +ISH+L C DD + VAA ++ ++ +K E +
Sbjct: 451 QNQSSKDNHQNGASSQAGESISHSLSSDYCPRSDDEANPTVAATTEDQEAEKPGSLEEEE 510
Query: 344 AMDKAKAEEENTEKRSQNLDEAKKI 418
++ K E E E+R + +E K+I
Sbjct: 511 EDERLKEELEKIEERFR--EEMKEI 533
>At1g49160.1 68414.m05511 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 539
Score = 28.7 bits (61), Expect = 5.4
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Frame = +2
Query: 179 ERETIQDNIESNASCWQ-RAISHNL----CYSKDDTKDYDVAAKSQLKKIQKIWVRENYK 343
+ ++ +DN ++ AS +ISH+L C DD + VAA ++ ++ +K E +
Sbjct: 433 QNQSSKDNHQNGASSQAGESISHSLSSDYCPRSDDEANPTVAATTEDQEAEKPGSLEEEE 492
Query: 344 AMDKAKAEEENTEKRSQNLDEAKKI 418
++ K E E E+R + +E K+I
Sbjct: 493 EDERLKEELEKIEERFR--EEMKEI 515
>At3g53000.1 68416.m05842 F-box family protein / SKP1 interacting
partner 3-related low similarity to SKP1 interacting
partner 3 [Arabidopsis thaliana] GI:10716951; contains
Pfam profile PF00646: F-box domain
Length = 300
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 540 ISGIPDPA*WHWVPTVRSTWFTMSDLQ 620
I+GI D W+W+PT S + ++ LQ
Sbjct: 126 ITGIEDRRYWNWIPTEESRFHVVAYLQ 152
>At3g28510.1 68416.m03561 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 530
Score = 28.3 bits (60), Expect = 7.1
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +2
Query: 260 KDDTKDYDVAAKSQLKKIQ--KIWVRENYKAMDKAKAEEENTEKRSQNLDEAKKILLQED 433
K D +D D+ K +K ++ K R+ + +K KAE+E + + E KK +ED
Sbjct: 440 KSDEEDADICIKRLVKTLEEEKEKARKLAEEEEKKKAEKEAKKMKKAEEAEEKKKKTEED 499
Query: 434 PSLPK 448
K
Sbjct: 500 EKKEK 504
>At3g02860.2 68416.m00279 expressed protein
Length = 313
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/74 (22%), Positives = 37/74 (50%)
Frame = +2
Query: 260 KDDTKDYDVAAKSQLKKIQKIWVRENYKAMDKAKAEEENTEKRSQNLDEAKKILLQEDPS 439
KD+ K+++ + L+ + R + +D A+ EE ++ ++ E +IL ++
Sbjct: 211 KDEYKEFEKLIQDDLQVVDS---RMEEEEVDAAETIEEEEQREQRSYKEKVEILKRKKME 267
Query: 440 LPKATVVKICETTE 481
L A + K +T+E
Sbjct: 268 LKAARLAKRSKTSE 281
>At3g02860.1 68416.m00278 expressed protein
Length = 312
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/74 (22%), Positives = 37/74 (50%)
Frame = +2
Query: 260 KDDTKDYDVAAKSQLKKIQKIWVRENYKAMDKAKAEEENTEKRSQNLDEAKKILLQEDPS 439
KD+ K+++ + L+ + R + +D A+ EE ++ ++ E +IL ++
Sbjct: 210 KDEYKEFEKLIQDDLQVVDS---RMEEEEVDAAETIEEEEQREQRSYKEKVEILKRKKME 266
Query: 440 LPKATVVKICETTE 481
L A + K +T+E
Sbjct: 267 LKAARLAKRSKTSE 280
>At1g58270.1 68414.m06628 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 396
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 500 ISSDHGVQLFHIFSQQWPLVNLDPL 426
IS + Q FH+F QQW L+ P+
Sbjct: 184 ISQETEAQRFHLFKQQWGLLQFLPI 208
>At5g23760.1 68418.m02790 heavy-metal-associated domain-containing
protein Pfam profile PF00403: Heavy-metal-associated
domain
Length = 103
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +2
Query: 284 VAAKSQLKKIQKIWVRENYKAMDKAKAEEENTEKRSQNLDEAKKILLQEDP 436
VA +LKK+ K+ + A ++ K EE+ EK+ + +E K+ +E+P
Sbjct: 52 VAVVKKLKKVGKVDLISVGPAKEEKK-EEKKEEKKEEKKEEKKEEQKEEEP 101
>At1g77460.1 68414.m09020 C2 domain-containing protein /
armadillo/beta-catenin repeat family protein similar to
CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
profiles PF00514: Armadillo/beta-catenin-like repeat,
PF00168: C2 domain
Length = 2110
Score = 27.9 bits (59), Expect = 9.4
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +2
Query: 254 YSKDDTKDYDVAAKSQLKKIQKIWVREN-YKAMDKAKAEEENTEKRSQNLDEAKKILLQE 430
+ +D T V +L I + ++E KA++K A ++ + E K++LQE
Sbjct: 1563 FQQDITTQSAVVPLVRLAGIGILSLQETAIKALEKISASWPKAVLDAEGIFELSKVILQE 1622
Query: 431 DPSLP 445
DP P
Sbjct: 1623 DPQPP 1627
>At1g35515.1 68414.m04409 myb family transcription factor (MYB8)
similar to DNA-binding protein GB:AAA98761 GI:1020155
from [Arabidopsis thaliana]
Length = 212
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 454 CCENM*NN*TPWSEDMHQRWVHRLRRQGKSLAFLTLRDGTGYLQC 588
CCE N W+++ QR + +R G+ ++ +L G L+C
Sbjct: 6 CCEKAHMNKGAWTKEEDQRLIDYIRNHGEG-SWRSLPKSVGLLRC 49
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,096,362
Number of Sequences: 28952
Number of extensions: 410976
Number of successful extensions: 1124
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -