Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30125.Seq
(682 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g52240.1 68418.m06484 cytochrome b5 domain-containing protein... 83 2e-16
At3g48890.1 68416.m05341 cytochrome b5 domain-containing protein... 82 3e-16
At2g24940.1 68415.m02982 cytochrome b5 domain-containing protein... 74 8e-14
At4g14965.1 68417.m02300 cytochrome b5 domain-containing protein... 64 6e-11
At4g16790.1 68417.m02536 hydroxyproline-rich glycoprotein family... 33 0.17
At3g56140.1 68416.m06240 expressed protein At2g40400 - Arabidops... 31 0.71
At1g35080.1 68414.m04347 hypothetical protein 30 1.6
At5g36060.1 68418.m04344 hypothetical protein 29 2.2
At3g26260.1 68416.m03276 Ulp1 protease family protein contains P... 29 2.8
At5g14920.1 68418.m01750 gibberellin-regulated family protein si... 29 3.8
At5g56890.1 68418.m07099 protein kinase family protein contains ... 28 6.6
At3g53570.3 68416.m05915 protein kinase (AFC1) (AME2) identical ... 28 6.6
At3g53570.2 68416.m05916 protein kinase (AFC1) (AME2) identical ... 28 6.6
At3g53570.1 68416.m05917 protein kinase (AFC1) (AME2) identical ... 28 6.6
At3g44750.1 68416.m04817 histone deacetylase, putative (HD2A) co... 24 7.9
At5g60640.2 68418.m07611 thioredoxin family protein similar to p... 27 8.7
At5g60640.1 68418.m07610 thioredoxin family protein similar to p... 27 8.7
>At5g52240.1 68418.m06484 cytochrome b5 domain-containing protein
similar to SP|P70580 Membrane associated progesterone
receptor component 1 {Rattus norvegicus}; contains Pfam
profile PF00173: Heme/Steroid binding domain
Length = 220
Score = 83.0 bits (196), Expect = 2e-16
Identities = 40/85 (47%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Frame = +3
Query: 255 MTAVELRQYDGTQEGGRVLMAVNGWIFDVTRGNRFYGPGGPYAVFGGRDATRGLATFSVT 434
+T EL+QYDG+ +LMA+ I+DVT+ FYGPGGPYA+F G+DA+R LA S
Sbjct: 75 ITEEELKQYDGSDPQKPLLMAIKHQIYDVTQSRMFYGPGGPYALFAGKDASRALAKMSF- 133
Query: 435 APEKDYD-DLSDLNSMEMESVREWE 506
EKD D+S L E++++++WE
Sbjct: 134 -EEKDLTWDVSGLGPFELDALQDWE 157
>At3g48890.1 68416.m05341 cytochrome b5 domain-containing protein
similar to SP|O00264 Membrane associated progesterone
receptor component (mPR) {Homo sapiens}; contains Pfam
profile PF00173: Heme/Steroid binding domain
Length = 233
Score = 82.2 bits (194), Expect = 3e-16
Identities = 37/84 (44%), Positives = 56/84 (66%)
Frame = +3
Query: 255 MTAVELRQYDGTQEGGRVLMAVNGWIFDVTRGNRFYGPGGPYAVFGGRDATRGLATFSVT 434
+T EL+ YDG+ +LMA+ G I+DV++ FYGPGGPYA+F G+DA+R LA S
Sbjct: 71 ITEEELKLYDGSDSKKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFE 130
Query: 435 APEKDYDDLSDLNSMEMESVREWE 506
+ D+S L + E+E++++WE
Sbjct: 131 DQDLT-GDISGLGAFELEALQDWE 153
>At2g24940.1 68415.m02982 cytochrome b5 domain-containing protein
similar to SP|P70580 Membrane associated progesterone
receptor component 1 {Rattus norvegicus}; contains Pfam
profile PF00173: Heme/Steroid binding domain
Length = 100
Score = 74.1 bits (174), Expect = 8e-14
Identities = 36/88 (40%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Frame = +3
Query: 258 TAVELRQYDGTQEGGRVLMAVNGWIFDVTRGNRFYGPGGPYAVFGGRDATRGLATFSVTA 437
TA +L QY+GT E + +A+ G +FDVT G FYG GG Y++F G+DA+R L S
Sbjct: 4 TAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKMSKN- 62
Query: 438 PEKDYD-DLSDLNSMEMESVREWEDNLE 518
E+D L L E+ ++ +WE E
Sbjct: 63 -EEDVSPSLEGLTEKEINTLNDWETKFE 89
>At4g14965.1 68417.m02300 cytochrome b5 domain-containing protein
similar to SP|O15173 Membrane associated progesterone
receptor component 2 (Steroid receptor protein DG6)
{Homo sapiens}; contains Pfam profile PF00173:
Heme/Steroid binding domain
Length = 245
Score = 64.5 bits (150), Expect = 6e-11
Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Frame = +3
Query: 249 KRM-TAVELRQYDGTQEGGRVLMAVNGWIFDVTRGNRFYGPGGPYAVFGGRDATRGLATF 425
KR+ +A EL Y+GT E +L+ + G +FDVT+G YG GG Y F GRDA+R +
Sbjct: 39 KRLFSAEELALYNGTDETLPILLGILGSVFDVTKGKFHYGSGGGYNHFAGRDASRAFVSG 98
Query: 426 SVTAPEKDYDDLSDLNSMEMESVREW 503
+ T + D L L+S E++S+ +W
Sbjct: 99 NFTG-DGLTDSLQGLSSSEVKSIVDW 123
>At4g16790.1 68417.m02536 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 473
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -1
Query: 418 ASPLVASLPPKTAYGPPGP*NRFPLVTSNIHPFTAINTLPPSCVPSYCRSST 263
+ PL+ +L P +++ P N P + S HP PP +P++ SS+
Sbjct: 249 SQPLIKNLTPPSSFSSPRKSNPIPNLASEFHPSPPPPPPPPPPLPAFYNSSS 300
>At3g56140.1 68416.m06240 expressed protein At2g40400 - Arabidopsis
thaliana, EMBL:AC007020
Length = 745
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/52 (38%), Positives = 23/52 (44%)
Frame = -1
Query: 466 SLKSS*SFSGAVTENVASPLVASLPPKTAYGPPGP*NRFPLVTSNIHPFTAI 311
SL S S S VT S P T PP P N+ +TS I+ TAI
Sbjct: 88 SLASEESSSATVTSPAESAAPPPPPATTTPSPPPPVNKEETITSRIYDATAI 139
>At1g35080.1 68414.m04347 hypothetical protein
Length = 386
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +2
Query: 230 KNYLNCEKNDRSRTTAVRR---DTGGWQSVDGCEWVDIR 337
K L+C + DRSR++ + GGW +DG W R
Sbjct: 75 KETLSCVRLDRSRSSLWMEPYGEDGGWVQIDGAYWAQPR 113
>At5g36060.1 68418.m04344 hypothetical protein
Length = 165
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +2
Query: 287 DTGGWQSVDGCEWVDIRCD*RESVLRSRWAICCFWRKRCHKRT 415
+ GGW +DG W R RES+ R C + R HKR+
Sbjct: 125 EDGGWVQIDGAYWAQPRV--RESIPR-----CSRCKSRAHKRS 160
>At3g26260.1 68416.m03276 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 989
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 438 PEKDYDDLSDLNSMEMESVREWEDNLERIMIWSVD 542
PE D DD SD+ + E R W L+ ++W VD
Sbjct: 250 PEVDEDDDSDMEETQKEIERLWSLKLD--IVWKVD 282
>At5g14920.1 68418.m01750 gibberellin-regulated family protein
similar to SP|P46689 Gibberellin-regulated protein 1
precursor {Arabidopsis thaliana}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 275
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -1
Query: 430 TENVASPLVASLPPKTAYGPPGP*NRFP-LVTSNIHPFTAINTLPPSCVP 284
T + SP A+ PP A PP P + P L T+ I P T + P +P
Sbjct: 35 TPTLPSPSPATKPPSPALKPPTPSYKPPTLPTTPIKPPTTKPPVKPPTIP 84
>At5g56890.1 68418.m07099 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 1113
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = -1
Query: 445 FSGAVTENVASPLVASLP--PKTAYGPPGP*NRFPLVTSNIH 326
FSG VT S V+ +P P A PP P N P SN H
Sbjct: 145 FSGRVTPAPVSSPVSDIPPIPSVALPPPTPSNVPPRNASNNH 186
>At3g53570.3 68416.m05915 protein kinase (AFC1) (AME2) identical to
protein kinase AFC1 (EC 2.7.1.-) [Arabidopsis thaliana]
Length = 453
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = -1
Query: 433 VTENVASPLVASLPPKTAYGPP---GP*NRFPLVTSNIHPFTAINTLPPSCVPSY 278
+T + A PL+ PP T + PP GP LV + ++P N LP P +
Sbjct: 26 LTWDAAPPLLPPPPPPTVFQPPLYYGPEFASGLVPNFVYPNMFYNGLPRQGSPPW 80
>At3g53570.2 68416.m05916 protein kinase (AFC1) (AME2) identical to
protein kinase AFC1 (EC 2.7.1.-) [Arabidopsis thaliana]
Length = 467
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = -1
Query: 433 VTENVASPLVASLPPKTAYGPP---GP*NRFPLVTSNIHPFTAINTLPPSCVPSY 278
+T + A PL+ PP T + PP GP LV + ++P N LP P +
Sbjct: 40 LTWDAAPPLLPPPPPPTVFQPPLYYGPEFASGLVPNFVYPNMFYNGLPRQGSPPW 94
>At3g53570.1 68416.m05917 protein kinase (AFC1) (AME2) identical to
protein kinase AFC1 (EC 2.7.1.-) [Arabidopsis thaliana]
Length = 467
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = -1
Query: 433 VTENVASPLVASLPPKTAYGPP---GP*NRFPLVTSNIHPFTAINTLPPSCVPSY 278
+T + A PL+ PP T + PP GP LV + ++P N LP P +
Sbjct: 40 LTWDAAPPLLPPPPPPTVFQPPLYYGPEFASGLVPNFVYPNMFYNGLPRQGSPPW 94
>At3g44750.1 68416.m04817 histone deacetylase, putative (HD2A)
contains Pfam domain, PF00096: Zinc finger, C2H2 type;
identical to cDNA putative histone deacetylase (HD2A)
GI:11066134
Length = 245
Score = 24.2 bits (50), Expect(2) = 7.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 551 PGEEPRNYSDEEPEEAD 601
P EP+ YS+EE EE +
Sbjct: 95 PNIEPQGYSEEEEEEEE 111
Score = 21.8 bits (44), Expect(2) = 7.9
Identities = 6/20 (30%), Positives = 13/20 (65%)
Frame = +2
Query: 578 DEEPEEADTSALPNDDKENQ 637
D+E +E+D+ + DD + +
Sbjct: 137 DDEEDESDSDGMDEDDSDGE 156
>At5g60640.2 68418.m07611 thioredoxin family protein similar to
protein disulfide isomerase GI:5902592 from [Volvox
carteri f. nagariensis], GI:2708314 from Chlamydomonas
reinhardtii; contains Pfam profile: PF00085 Thioredoxin
Length = 536
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 557 EEPRNYSDEEPEEADTSALPNDDKE 631
E+P Y+D++ EE D S L N D +
Sbjct: 69 EDPDMYNDDDDEEGDFSDLGNPDSD 93
>At5g60640.1 68418.m07610 thioredoxin family protein similar to
protein disulfide isomerase GI:5902592 from [Volvox
carteri f. nagariensis], GI:2708314 from Chlamydomonas
reinhardtii; contains Pfam profile: PF00085 Thioredoxin
Length = 597
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 557 EEPRNYSDEEPEEADTSALPNDDKE 631
E+P Y+D++ EE D S L N D +
Sbjct: 69 EDPDMYNDDDDEEGDFSDLGNPDSD 93
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,275,482
Number of Sequences: 28952
Number of extensions: 332036
Number of successful extensions: 1081
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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