Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30124.Seq
(669 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 93 2e-19
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 93 2e-19
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 93 2e-19
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 91 5e-19
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 91 5e-19
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 89 3e-18
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 45 4e-05
At5g25950.1 68418.m03085 hypothetical protein various predicted ... 31 0.52
At3g52860.1 68416.m05825 expressed protein 31 0.92
At5g45310.1 68418.m05562 expressed protein 28 4.9
At5g06740.1 68418.m00762 lectin protein kinase family protein co... 27 8.5
At3g59970.3 68416.m06695 methylenetetrahydrofolate reductase 1 (... 27 8.5
At1g26540.1 68414.m03234 agenet domain-containing protein contai... 27 8.5
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 93.1 bits (221), Expect = 2e-19
Identities = 47/104 (45%), Positives = 65/104 (62%)
Frame = +1
Query: 355 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVSNVDSPS*V 534
+ +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+ +GYPNLKSV+EL+
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLN 159
Query: 535 DNVYQSLPTALLRRGSINTTLSVLRTFIHEIFTVGEKFKYASNF 666
+++ +G + + IHEI TVG FK A+NF
Sbjct: 160 HQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVGPHFKEANNF 203
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = +2
Query: 281 GNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 382
G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 75 GGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 108
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = +3
Query: 66 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKER 245
+++ VPESVLK Q + +K++ IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 246 DEI 254
+ I
Sbjct: 63 ELI 65
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 93.1 bits (221), Expect = 2e-19
Identities = 47/104 (45%), Positives = 65/104 (62%)
Frame = +1
Query: 355 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVSNVDSPS*V 534
+ +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+ +GYPNLKSV+EL+
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLN 159
Query: 535 DNVYQSLPTALLRRGSINTTLSVLRTFIHEIFTVGEKFKYASNF 666
+++ +G + + IHEI TVG FK A+NF
Sbjct: 160 HQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVGPHFKEANNF 203
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = +2
Query: 281 GNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 382
G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 75 GGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 108
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = +3
Query: 66 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKER 245
+++ VPESVLK Q + +K++ IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 246 DEI 254
+ I
Sbjct: 63 ELI 65
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 93.1 bits (221), Expect = 2e-19
Identities = 47/104 (45%), Positives = 65/104 (62%)
Frame = +1
Query: 355 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVSNVDSPS*V 534
+ +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+ +GYPNLKSV+EL+
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLN 159
Query: 535 DNVYQSLPTALLRRGSINTTLSVLRTFIHEIFTVGEKFKYASNF 666
+++ +G + + IHEI TVG FK A+NF
Sbjct: 160 HQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVGPHFKEANNF 203
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = +2
Query: 281 GNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 382
G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 75 GGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 108
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = +3
Query: 66 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKER 245
+++ VPESVLK Q + +K++ IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 246 DEI 254
+ I
Sbjct: 63 ELI 65
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 91.5 bits (217), Expect = 5e-19
Identities = 47/104 (45%), Positives = 64/104 (61%)
Frame = +1
Query: 355 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVSNVDSPS*V 534
+ +K+LQL RLRQI NGVF+++NKATVNMLR EPY+ +GYPNLKSV+EL+
Sbjct: 103 KTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLN 162
Query: 535 DNVYQSLPTALLRRGSINTTLSVLRTFIHEIFTVGEKFKYASNF 666
+++ + + + IHEI TVG FK A+NF
Sbjct: 163 HQRIALTDNSIVDQALGKHGIICVEDLIHEIMTVGPHFKEANNF 206
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = +2
Query: 281 GNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 382
G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 78 GGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 111
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = +3
Query: 87 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEI 254
VPESVLK + + +++ ++ IFKRAEQY KEY K+ + I
Sbjct: 13 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELI 68
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 91.5 bits (217), Expect = 5e-19
Identities = 47/104 (45%), Positives = 64/104 (61%)
Frame = +1
Query: 355 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVSNVDSPS*V 534
+ +K+LQL RLRQI NGVF+++NKATVNMLR EPY+ +GYPNLKSV+EL+
Sbjct: 98 KTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLN 157
Query: 535 DNVYQSLPTALLRRGSINTTLSVLRTFIHEIFTVGEKFKYASNF 666
+++ + + + IHEI TVG FK A+NF
Sbjct: 158 HQRIALTDNSIVDQALGKHGIICVEDLIHEIMTVGPHFKEANNF 201
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = +2
Query: 281 GNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 382
G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 73 GGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 106
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = +3
Query: 87 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEI 254
VPESVLK + + +++ ++ IFKRAEQY KEY K+ + I
Sbjct: 8 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELI 63
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 88.6 bits (210), Expect = 3e-18
Identities = 45/104 (43%), Positives = 63/104 (60%)
Frame = +1
Query: 355 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVSNVDSPS*V 534
+ +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+ +G+PNLKSV+EL+
Sbjct: 98 KTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEPYVTYGFPNLKSVKELIYKRGYGKLN 157
Query: 535 DNVYQSLPTALLRRGSINTTLSVLRTFIHEIFTVGEKFKYASNF 666
+++ + + IHEI TVG FK A+NF
Sbjct: 158 HQRIALTDNSIVEQALGKHGIICTEDLIHEILTVGPHFKEANNF 201
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = +2
Query: 281 GNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 382
G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 73 GGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 106
Score = 37.9 bits (84), Expect = 0.006
Identities = 22/56 (39%), Positives = 28/56 (50%)
Frame = +3
Query: 87 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEI 254
VPESVLK Q + + ++ IFKRAEQY KEY KE++ I
Sbjct: 8 VPESVLKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEKEKELI 63
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/104 (22%), Positives = 47/104 (45%)
Frame = +1
Query: 355 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVSNVDSPS*V 534
+ +++L +L+ + GVF + + L +PY+ +GYPN KSV++L+
Sbjct: 102 KTKRILNNLQLKSVFTGVFAKATDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKGCTIIE 161
Query: 535 DNVYQSLPTALLRRGSINTTLSVLRTFIHEIFTVGEKFKYASNF 666
N ++ + + + ++EI VG+ F+ F
Sbjct: 162 GNPVPLTDNNIIEQALGEHKILGIEDLVNEIARVGDHFREVMRF 205
Score = 44.8 bits (101), Expect = 5e-05
Identities = 49/197 (24%), Positives = 79/197 (40%), Gaps = 12/197 (6%)
Frame = +3
Query: 60 KEDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIK 239
+E++K L +PE VLK + S KKK KR E +V E+R K
Sbjct: 3 EEEAKGLDYIPEIVLKKRKNRDELAFIRKKQLELGNSGKKKKKVSDIKRPEDFVHEFRAK 62
Query: 240 ERDEI------------D*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRSP*SSATV* 383
E D I P K +V GK + H ++ +++ +S +
Sbjct: 63 EVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNNLQLKSVFTGVFAK 122
Query: 384 TAPNKQWCVCTSE*GYCEYATYRRALHCLGIPQLKECP*VSIKRGFAKLSGQRIPITSNS 563
+ + + Y TY G P K + K+G + G +P+T N+
Sbjct: 123 ATDSLFQKLLKVQ----PYVTY-------GYPNDKSVKDLIYKKGCTIIEGNPVPLTDNN 171
Query: 564 IVEKRLHKHNIICVEDL 614
I+E+ L +H I+ +EDL
Sbjct: 172 IIEQALGEHKILGIEDL 188
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 296 PGEAKLAFVIRIRGINQVSPKSVKFCNCL 382
P ++ L F+IRI+G N + PK+ + N L
Sbjct: 82 PVKSDLVFIIRIQGKNDMHPKTKRILNNL 110
>At5g25950.1 68418.m03085 hypothetical protein various predicted
proteins, Arabidopsis thaliana contains Pfam profile
PF03080: Arabidopsis proteins of unknown function
Length = 413
Score = 31.5 bits (68), Expect = 0.52
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Frame = -2
Query: 668 GKLLAYLNFSPTVKISWMKVLNTDNVVFMEPLLNNAVGSDWYTLSTQLGESTFDTNSRT- 492
G L YL S T + W +++ NVV +P A+GS + S E+ F TN R
Sbjct: 307 GTLFNYLKHSATA-VQWGGEVHSPNVVLKKPHTTTAMGSGQWA-SYIWAEACFHTNLRIK 364
Query: 491 --LFKLGYPQ 468
+L YPQ
Sbjct: 365 DYSMQLKYPQ 374
>At3g52860.1 68416.m05825 expressed protein
Length = 156
Score = 30.7 bits (66), Expect = 0.92
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 144 LQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEID 257
++ LK + IKK +F+ +++ VKE K RDE++
Sbjct: 117 MEEELKTKDELIKKHMRLFQESQKLVKEQIEKHRDELE 154
>At5g45310.1 68418.m05562 expressed protein
Length = 352
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 186 KREIFKRAEQYVKEYRIKERDEID*PDKH 272
++EI K + +KEYRI E+D + D+H
Sbjct: 107 RKEIEKNLREAIKEYRIMEQDLDELEDEH 135
>At5g06740.1 68418.m00762 lectin protein kinase family protein
contains Legume lectins beta-chain signature,
PROSITE:PS00307 and Serine/Threonine protein kinases
active-site signature, PROSITE:PS00108
Length = 652
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 310 IGICHPNPWYQPSFTEVRKVL 372
+ CHPNP +PS V KVL
Sbjct: 586 LACCHPNPNQRPSMKTVLKVL 606
>At3g59970.3 68416.m06695 methylenetetrahydrofolate reductase 1
(MTHFR1) identical to methylenetetrahydrofolate
reductase MTHFR1 [Arabidopsis thaliana] GI:5911425
Length = 592
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 310 IGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN-KATVNMLRIAEPYIAWGYP 480
IG +PW + + + +L +IN+ F+ +N + +VN + P I WG P
Sbjct: 403 IGNLKSSPWSELDGLQPETKIINEQLGKINSNGFLTINSQPSVNAAKSDSPAIGWGGP 460
>At1g26540.1 68414.m03234 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 695
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -1
Query: 387 QSKQLQNFTDF-GETWLIPRIRMTNANLASPGT 292
+ KQL+ + G TW+ P I +N ++ SPGT
Sbjct: 126 ERKQLRTHLIWTGGTWIQPEIEESNKSMFSPGT 158
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,406,420
Number of Sequences: 28952
Number of extensions: 272687
Number of successful extensions: 702
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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