Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30059.Seq
         (702 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08710.1 68418.m01035 regulator of chromosome condensation (R...    31   0.74 
At1g67720.1 68414.m07728 leucine-rich repeat family protein / pr...    30   1.3  
At3g07900.1 68416.m00965 expressed protein contains Pfam PF03138...    29   3.9  
At5g60870.2 68418.m07635 regulator of chromosome condensation (R...    28   5.2  
At5g60870.1 68418.m07636 regulator of chromosome condensation (R...    28   5.2  
At1g19880.1 68414.m02493 regulator of chromosome condensation (R...    28   6.9  

>At5g08710.1 68418.m01035 regulator of chromosome condensation
           (RCC1) family protein / UVB-resistance protein-related
           contains Pfam PF00415 : Regulator of chromosome
           condensation (RCC1); similar to UVB-resistance protein
           UVR8  (GI:10177674) {Arabidopsis thaliana}
          Length = 434

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +2

Query: 350 WHPMRSSFAERFDITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIG 493
           W P   S      IT +ACG   T+     +E  +VF TG+N   Q+G
Sbjct: 71  WTPAVCSALSDHSITAVACGGAHTLF---LTETRRVFATGLNDCGQLG 115


>At1g67720.1 68414.m07728 leucine-rich repeat family protein /
           protein kinase family protein contains similarity to
           light repressible receptor protein kinase [Arabidopsis
           thaliana] gi|1321686|emb|CAA66376; contains Pfam doamins
           PF00069: Protein kinase domain and PF00560: Leucine Rich
           Repeat
          Length = 929

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 285 WVSTSHVARKGKKVTKTTSNWFGIQ 359
           WVS S + ++GK VT   +NW  +Q
Sbjct: 46  WVSDSEIIKQGKPVTLANTNWNSMQ 70


>At3g07900.1 68416.m00965 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'auxin-independent growth promoter -related'  based on
           similarity to axi 1 protein (GB:X80301) (GI:559920) from
           [Nicotiana tabacum], which, due to scienitific fraud was
           retracted. Retraction in: Schell J. EMBO J 1999 May
           17;18(10):2908. PMID:10400497.
          Length = 579

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +3

Query: 174 KKVHDPSEEELLPIFQYPISKSTDRRVMCGDLLRQXLWVSTSHVARKGKKVTK 332
           KK+  P++  +LP F       T+   M   L RQ L      +++ G+ VTK
Sbjct: 512 KKIITPNKRHMLPYFVNSSLTETEFEKMIKKLHRQSLGQPELRISKAGRDVTK 564


>At5g60870.2 68418.m07635 regulator of chromosome condensation
           (RCC1) family protein weak similarity to UVB-resistance
           protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
           Pfam profile PF00415: Regulator of chromosome
           condensation (RCC1)
          Length = 383

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +2

Query: 350 WHPMRSSFAERFDITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIG 493
           W PM     E   IT IACG G+   S+  +E+ KV   G     Q+G
Sbjct: 234 WEPMPVPSLEGVRITQIACG-GY--HSLALTEEGKVLSWGHGGHGQLG 278


>At5g60870.1 68418.m07636 regulator of chromosome condensation
           (RCC1) family protein weak similarity to UVB-resistance
           protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
           Pfam profile PF00415: Regulator of chromosome
           condensation (RCC1)
          Length = 445

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +2

Query: 350 WHPMRSSFAERFDITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIG 493
           W PM     E   IT IACG G+   S+  +E+ KV   G     Q+G
Sbjct: 303 WEPMPVPSLEGVRITQIACG-GY--HSLALTEEGKVLSWGHGGHGQLG 347


>At1g19880.1 68414.m02493 regulator of chromosome condensation
           (RCC1) family protein low similarity to UVB-resistance
           protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
           Pfam profile PF00415: Regulator of chromosome
           condensation (RCC1)
          Length = 538

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 386 DITNIACGYGFTVASIKTSEQHKVFGTGINTDSQIGY 496
           ++TN+ACG  FTV  + ++E   +   G+    Q+G+
Sbjct: 168 EVTNVACGADFTV-WLSSTEGASILTAGLPQYGQLGH 203


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,601,729
Number of Sequences: 28952
Number of extensions: 291186
Number of successful extensions: 680
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)