Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0097.Seq
         (724 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family...    31   1.0  
At1g63480.1 68414.m07178 DNA-binding family protein contains a A...    30   1.8  
At5g03000.1 68418.m00245 kelch repeat-containing F-box family pr...    27   9.5  

>At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family
           protein Common family members: At5g26070, At5g19800,
           At1g72790 [Arabidopsis thaliana]
          Length = 575

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = -3

Query: 365 THSMLRTYDFQ*N**HSGTRPARV--PRPHHPQPXKPDPERPYILNKTFRKSHSNISKRS 192
           TH  +R  D Q N   S T+  R   P P  P P  P P +P I     RK  +   ++S
Sbjct: 270 THRSVRNRDLQENAKRSETKFKRTFQPPPSPPPPPPPPPPQPLIAATPPRKQGTLQRRKS 329

Query: 191 N 189
           N
Sbjct: 330 N 330


>At1g63480.1 68414.m07178 DNA-binding family protein contains a AT
           hook motif (DNA binding motifs with a preference for A/T
           rich regions), Pfam:PF02178
          Length = 361

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 320 HSGTRPARVPRPHHPQPXKPDP 255
           H+G RP   P  HHPQ   P P
Sbjct: 41  HTGLRPMSNPNIHHPQANNPGP 62


>At5g03000.1 68418.m00245 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 354

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 287 VAAPGLDAYHCVISFTENHMYV 352
           +A+P L+A    I  TENH+YV
Sbjct: 74  IASPDLEATRSRIGVTENHLYV 95


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,474,321
Number of Sequences: 28952
Number of extensions: 274900
Number of successful extensions: 674
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)