Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302B02f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58730.1 68416.m06546 vacuolar ATP synthase subunit D (VATD) ...   112   1e-25
At1g56130.1 68414.m06445 leucine-rich repeat family protein / pr...    32   0.20 
At3g55060.1 68416.m06115 expressed protein contains weak similar...    29   1.4  
At3g01320.1 68416.m00045 paired amphipathic helix repeat-contain...    29   1.9  
At5g11370.1 68418.m01327 hypothetical protein various predicted ...    28   4.4  
At1g72890.1 68414.m08431 disease resistance protein (TIR-NBS cla...    27   5.8  
At1g09780.1 68414.m01097 2,3-biphosphoglycerate-independent phos...    27   7.7  

>At3g58730.1 68416.m06546 vacuolar ATP synthase subunit D (VATD) /
           V-ATPase D subunit / vacuolar proton pump D subunit
           (VATPD) identical to Vacuolar ATP synthase subunit D (EC
           3.6.3.14) (V-ATPase D subunit) (Vacuolar proton pump D
           subunit) (Swiss-Prot:Q9XGM1) [Arabidopsis thaliana]
          Length = 261

 Score =  112 bits (270), Expect = 1e-25
 Identities = 55/123 (44%), Positives = 84/123 (68%), Gaps = 2/123 (1%)
 Frame = +1

Query: 55  MSGKD-RLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMG 231
           M+G++ RL + P+     ++K RL GA +GH LLKKK+DAL V+FR +L KI+  K  MG
Sbjct: 1   MAGQNARLNVVPTVTMLGVMKARLVGATRGHALLKKKSDALTVQFRALLKKIVTAKESMG 60

Query: 232 EVMKEAAFSLAEAKFTTGD-FNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGSDT 408
           ++MK ++F+L E K+  GD    VVL+NV +A +K+RS+ +N+AGV LP F+ + +G   
Sbjct: 61  DMMKTSSFALTEVKYVAGDNVKHVVLENVKEATLKVRSRTENIAGVKLPKFDHFSEGETK 120

Query: 409 YEL 417
            +L
Sbjct: 121 NDL 123



 Score = 40.3 bits (90), Expect = 8e-04
 Identities = 19/32 (59%), Positives = 25/32 (78%)
 Frame = +2

Query: 422 GLARGGQQLAKLKKNFQSAVKLLVELASLQTS 517
           GLARGGQQ+   +  +  A+++LVELASLQTS
Sbjct: 125 GLARGGQQVRACRVAYVKAIEVLVELASLQTS 156


>At1g56130.1 68414.m06445 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1032

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 20/70 (28%), Positives = 32/70 (45%)
 Frame = +1

Query: 85  PSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMKEAAFSLA 264
           PS+G      G + G + G GLL   A  +    R    +  + + L+G  +K   F+ +
Sbjct: 628 PSKGKNRT--GTIVGVIVGVGLLSILAGVVMFTIRKRRKRYTDDEELLGMDVKPYIFTYS 685

Query: 265 EAKFTTGDFN 294
           E K  T DF+
Sbjct: 686 ELKSATQDFD 695


>At3g55060.1 68416.m06115 expressed protein contains weak similarity
           to intracellular protein transport protein USO1
           (Swiss-Prot:P25386) [Saccharomyces cerevisiae];
           expression supported by MPSS
          Length = 896

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = +2

Query: 290 STKLCYKMLPRLKSRLG--PRRTMLLVSPSQSLSHTRMVLIPMSWAGLARGGQQLAKLKK 463
           S++LCYK+L  +K +L   P       S    LS   M+   M   G+ RG + L +  +
Sbjct: 639 SSQLCYKLLKFIKGKLTQLPETYQDKNSVKDGLSEQFMIESEMKVHGIRRGTENLKRSLQ 698

Query: 464 NFQSAVKLLVELASLQT 514
              S V    E +S  T
Sbjct: 699 TVTSVVASNSESSSSNT 715


>At3g01320.1 68416.m00045 paired amphipathic helix repeat-containing
           protein low similarity to transcription co-repressor
           Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile
           PF02671: Paired amphipathic helix repeat
          Length = 1378

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -3

Query: 519 KEVCSDANSTKSFTALWKFFLSFASCCPPRAKPAQLI 409
           +E+CS          LW+ FL      PPRAK   L+
Sbjct: 723 EELCSTKEQLSKVLRLWENFLEAVLGVPPRAKGTDLV 759


>At5g11370.1 68418.m01327 hypothetical protein various predicted
           proteins, Arabidopsis thaliana
          Length = 311

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +2

Query: 347 RTMLLVSPSQSLSHTRMVLIPMSWAGLARGGQQLAKLKKNFQSAVKLLVEL 499
           R   ++ P  SLS+  + +  +  A +ARG   + KL K+  S  +L + L
Sbjct: 127 RKFAVIIPQSSLSYLIVNMPKLEEADIARGSHDVKKLLKSISSVKRLSLYL 177


>At1g72890.1 68414.m08431 disease resistance protein (TIR-NBS
           class), putative domain signature TIR-NBS exists,
           suggestive of a disease resistance protein.
          Length = 438

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +2

Query: 290 STKLCYKMLPRLKSRLGPRRTMLLVSPSQSLSHTRMVLIPMSWAG 424
           +TK C++ L  +K+RL  ++ +L+ +    L     +    SW G
Sbjct: 298 TTKNCHRCLKTIKARLRNKKVLLVANDVDKLEQFDALAEEFSWFG 342


>At1g09780.1 68414.m01097 2,3-biphosphoglycerate-independent
           phosphoglycerate mutase, putative /
           phosphoglyceromutase, putative strong similarity to
           SP|Q42908 2,3-bisphosphoglycerate-independent
           phosphoglycerate mutase (EC 5.4.2.1)
           (Phosphoglyceromutase) {Mesembryanthemum crystallinum};
           contains Pfam profile PF01676: Metalloenzyme superfamily
          Length = 557

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = -3

Query: 360 SNIVLLGPNLDLSLGNIL*HNLVEVSSCELSFSQRESSFFHYFTHKGFSLNDFAQDHTE- 184
           S  ++  P +D + G  L HN V   +C  +      +FF      G+  N+  +++ E 
Sbjct: 328 SRYLVSPPEIDRTSGEYLTHNGVSTFACSETVKFGHVTFFWNGNRSGY-FNEKLEEYVEI 386

Query: 183 PHLKGISLLLEETM 142
           P   GIS  ++  M
Sbjct: 387 PSDSGISFNVQPKM 400


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,375,246
Number of Sequences: 28952
Number of extensions: 230675
Number of successful extensions: 562
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)