Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301G12f
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel factory-r...    28   3.2  
At5g63200.1 68418.m07935 tetratricopeptide repeat (TPR)-containi...    27   5.7  
At2g27775.2 68415.m03367 expressed protein                             27   7.5  
At2g27775.1 68415.m03366 expressed protein                             27   7.5  
At3g51940.1 68416.m05697 expressed protein                             27   9.9  

>At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel
            factory-related similar to RNA helicase GB:AAF03534
          Length = 1317

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +3

Query: 294  PPRAAEPVLCPSSISLPFSYAALELIPPGFSAP*DVLLQTWLKKSLKMENISTI 455
            PP     +L P S+ + +SY     IP        +L+   LKKS+   NI TI
Sbjct: 856  PPELCHVILSPISVDMIYSYT---FIPSVMQRIESLLIAYNLKKSIPKVNIPTI 906


>At5g63200.1 68418.m07935 tetratricopeptide repeat (TPR)-containing
           protein low similarity to SP|P28290 Sperm-specific
           antigen 2 (Cleavage signal-1 protein) (CS-1) Homo
           sapiens; contains Pfam profile PF00515: TPR Domain
          Length = 649

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = -1

Query: 390 ALRSLEGLIPEPRMRKVKISMKDTGRVPRLWVDAGVYNVQAGCSFANVRLL 238
           +++ LEG   E  + K+K S+K   R   +W   G+  ++AGC  + + +L
Sbjct: 204 SVKELEGEELEEILSKLKDSIKLDVRQAAVWNTLGLMLLKAGCLMSAISVL 254


>At2g27775.2 68415.m03367 expressed protein
          Length = 112

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -1

Query: 462 IGILLRCSPFLRTF*ATFEVRHLMALRSLEGLIPEPRMR--KVKISMKDTGRVPRL 301
           IGI  R + F+R+   T   R+L++ R+    +P P     +   S +  G VPRL
Sbjct: 4   IGIASRSATFMRSINRTATARNLISSRARPS-VPNPNFTSPRFNTSSRIEGSVPRL 58


>At2g27775.1 68415.m03366 expressed protein
          Length = 100

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -1

Query: 462 IGILLRCSPFLRTF*ATFEVRHLMALRSLEGLIPEPRMR--KVKISMKDTGRVPRL 301
           IGI  R + F+R+   T   R+L++ R+    +P P     +   S +  G VPRL
Sbjct: 4   IGIASRSATFMRSINRTATARNLISSRARPS-VPNPNFTSPRFNTSSRIEGSVPRL 58


>At3g51940.1 68416.m05697 expressed protein 
          Length = 453

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +1

Query: 391 HEMSYFKRGLKSP*KW---RTSQQYADDDVPVWSNR 489
           H   + +R  +SP +W   R S   +DD +PVW  R
Sbjct: 6   HRSRHHRR--RSPERWYSGRQSSSSSDDGIPVWEKR 39


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,817,857
Number of Sequences: 28952
Number of extensions: 247080
Number of successful extensions: 532
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)