Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301G04f
         (316 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02450.1 68417.m00332 glycine-rich protein similar to several...    42   7e-05
At3g03773.1 68416.m00384 expressed protein                             40   4e-04
At5g19750.1 68418.m02348 peroxisomal membrane 22 kDa family prot...    27   2.6  
At5g52860.1 68418.m06561 ABC transporter family protein                27   3.5  
At5g02910.1 68418.m00234 F-box family protein similar to ribosom...    27   3.5  
At1g16320.1 68414.m01953 expressed protein ESTs gb|T76348, gb|N6...    27   3.5  
At4g34830.1 68417.m04942 pentatricopeptide (PPR) repeat-containi...    26   6.1  
At3g45870.1 68416.m04964 integral membrane family protein / nodu...    26   6.1  
At5g28350.2 68418.m03443 expressed protein                             25   8.1  
At5g28350.1 68418.m03442 expressed protein                             25   8.1  
At3g61480.1 68416.m06885 expressed protein                             25   8.1  
At3g05960.1 68416.m00680 sugar transporter, putative similar to ...    25   8.1  
At1g59620.1 68414.m06705 disease resistance protein (CC-NBS clas...    25   8.1  
At1g33390.1 68414.m04133 helicase domain-containing protein simi...    25   8.1  

>At4g02450.1 68417.m00332 glycine-rich protein similar to several
           proteins containing a tandem repeat region such as
           Plasmodium falciparum GGM tandem repeat protein
           (GB:U27807)
          Length = 241

 Score = 42.3 bits (95), Expect = 7e-05
 Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
 Frame = +2

Query: 56  PPVLWAQRKEDVFLTFSV-ETKDPTIKIEKDSVY-FRGEGAPDNRLHEVTIALYDTVLPE 229
           P V WA+  E +FLT  + +TKD  + ++ + V+ F  +  P+N ++E+ + L D V  E
Sbjct: 5   PEVKWAETTEKIFLTVVLADTKDTKVNLDPEGVFDFSAKVGPENHVYELKLELADKVNVE 64

Query: 230 KS 235
           +S
Sbjct: 65  ES 66


>At3g03773.1 68416.m00384 expressed protein
          Length = 150

 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
 Frame = +2

Query: 56  PPVLWAQRKEDVFLTFSV-ETKDPTIKIEKDSVY-FRGEGAPDNRLHEVTIALYDTVLPE 229
           P VLWAQR + V+LT ++ + KD ++K E   ++ F   GA   R  E ++ LY  ++ E
Sbjct: 5   PEVLWAQRSDKVYLTVALPDAKDISVKCEPQGLFSFSALGAQGERF-EFSLELYGKIMTE 63


>At5g19750.1 68418.m02348 peroxisomal membrane 22 kDa family protein
           similar to SP|P42925 22 kDa peroxisomal membrane protein
           {Mus musculus}; contains Pfam profile PF04117: Mpv17 /
           PMP22 family
          Length = 288

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -2

Query: 225 GRTVSYSAIVTSCSLLSGAPSPLKYTESFSILIVGSLVSTLNVRKTSS 82
           G+   +S +    +LLS +P   K   +  + +VG L+  L + KTSS
Sbjct: 107 GKGKKWSLLSWYQALLSNSPVLTKAVTAALLNLVGDLICQLTINKTSS 154


>At5g52860.1 68418.m06561 ABC transporter family protein 
          Length = 589

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 29/92 (31%), Positives = 42/92 (45%)
 Frame = -2

Query: 282 SFRNIISXHLPLFTKTLFSGRTVSYSAIVTSCSLLSGAPSPLKYTESFSILIVGSLVSTL 103
           S+R I S ++P    + F   TVS +    +C LL   P+P   +E+     V SL+S L
Sbjct: 97  SYRKI-SSYVPQHD-SFFPLLTVSETFSFAACLLL---PNPSIVSET-----VTSLLSEL 146

Query: 102 NVRKTSSFRCAHNTGGGTEISLDIIF*VTHGP 7
           N+   S  R A    GG    + I   + H P
Sbjct: 147 NLTHLSHTRLAQGLSGGERRRVSIGLSLLHDP 178


>At5g02910.1 68418.m00234 F-box family protein similar to ribosomal
           RNA apurinic site specific lyase [Triticum aestivum]
           GI:6505722; contains F-box domain Pfam:PF00646
          Length = 458

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 278 SVISSPHICPYLQKHSFPEEQC 213
           S IS  H+  YL+KHS  + QC
Sbjct: 344 SSISELHLNDYLRKHSLNQRQC 365


>At1g16320.1 68414.m01953 expressed protein ESTs gb|T76348,
           gb|N65615 and gb|Z18119 come from this gene
          Length = 273

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
 Frame = -2

Query: 252 PLFTKTLFSGRTVSYSAI---VTSCSLLSGAPSPLKYTE 145
           P+F+++L S  +VSY  +   +++ SLLS    PLK T+
Sbjct: 25  PIFSQSLSSSSSVSYEFVEENLSTLSLLSIQSPPLKDTQ 63


>At4g34830.1 68417.m04942 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 749

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 131 KIEKDSVYFRGEGAPDNRLHEVTIALYDTVLPEKSVF 241
           K+E++SV    E    +++HEV +  YD+V  E S F
Sbjct: 144 KVEEESVNLLEEEKA-HQIHEVAVMDYDSVSAEDSQF 179


>At3g45870.1 68416.m04964 integral membrane family protein / nodulin
           MtN21-related simlar to MtN21 GI:2598575 (root nodule
           development)  Medicago truncatula, EMBL:MTY15293
          Length = 385

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = -2

Query: 297 GPSVFSFRNIISXHLPLFTKTLFSGRTVSYSAIVTSCSLLSG 172
           GPS+ +  N +      F   +F G  +   +I+  C++++G
Sbjct: 287 GPSLVALYNPLQPAASAFLSRIFLGSPIYLGSILGGCAIIAG 328


>At5g28350.2 68418.m03443 expressed protein
          Length = 1087

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 283 FLP*YHLXTSALIYKNTLFRKNSVVQCYR-YLM*SII 176
           F P YHL  S+L+ +  L  K  V+  Y+ Y++ S +
Sbjct: 484 FYPRYHLDQSSLLCRKVLLGKPMVMDVYQDYILVSYL 520


>At5g28350.1 68418.m03442 expressed protein
          Length = 1127

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 283 FLP*YHLXTSALIYKNTLFRKNSVVQCYR-YLM*SII 176
           F P YHL  S+L+ +  L  K  V+  Y+ Y++ S +
Sbjct: 524 FYPRYHLDQSSLLCRKVLLGKPMVMDVYQDYILVSYL 560


>At3g61480.1 68416.m06885 expressed protein
          Length = 1091

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 283 FLP*YHLXTSALIYKNTLFRKNSVVQCYR-YLM*SII 176
           F P YHL  S+L+ +  L  K  V+  Y+ Y++ S +
Sbjct: 478 FYPRYHLDQSSLLCRKVLLGKPMVMDVYQDYILVSYL 514


>At3g05960.1 68416.m00680 sugar transporter, putative similar to
           hexose transporter GI:5734440 GB:CAB52689 [Lycopersicon
           esculentum], Sugar carrier protein C [Ricinus communis]
           SP|Q41144, monosaccharide transporter [Nicotiana
           tabacum] GI:19885; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 507

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = -2

Query: 255 LPLFTKTLFSGRTVSYSAIVTSCSLLSGAPSPLKYTESFSILIVGSLVSTLNV 97
           L LFT +L+    V+      +CS L   P+ +++   F ++ VG     +N+
Sbjct: 79  LQLFTSSLYLAALVASFVASATCSKLGRRPT-MQFASIFFLIGVGLTAGAVNL 130


>At1g59620.1 68414.m06705 disease resistance protein (CC-NBS class),
           putative domain signature CC-NBS exists, suggestive of a
           disease resistance protein.
          Length = 842

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 92  FLTFSVETKDPTIKIEKDSVYFRGEGAPDNRLHE 193
           FL  +   +D TI +EK S Y+  EG P  R ++
Sbjct: 391 FLYLAQFPEDFTIDLEKLSYYWAAEGMPRPRYYD 424


>At1g33390.1 68414.m04133 helicase domain-containing protein similar
            to kurz protein [Drosophila melanogaster] GI:5869803;
            contains Pfam profiles PF04408: Helicase associated
            domain (HA2), PF00271: Helicase conserved C-terminal
            domain
          Length = 1237

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 186  SLLSGAPSPLKYTESFSILIVGSLVSTLNVRK 91
            +LL+G P  L   E++ +  VGSLV  L  +K
Sbjct: 1156 ALLAGKPETLLEREAWGLERVGSLVMVLTEKK 1187


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,057,845
Number of Sequences: 28952
Number of extensions: 130751
Number of successful extensions: 356
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 330493944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)