Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301F05f
         (384 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67490.1 68414.m07686 alpha-glucosidase I (GCS1) / KNOPF (KNF...    28   2.5  
At3g60050.1 68416.m06706 pentatricopeptide (PPR) repeat-containi...    27   3.3  
At3g30550.1 68416.m03866 hypothetical protein includes At2g05890...    27   3.3  
At2g32860.1 68415.m04028 glycosyl hydrolase family 1 protein           27   3.3  
At4g21960.1 68417.m03178 peroxidase 42 (PER42) (P42) (PRXR1) ide...    27   4.3  
At5g55900.1 68418.m06970 sucrase-related similar to sucrase [Sol...    26   9.9  
At3g63330.1 68416.m07125 protein kinase family protein contains ...    26   9.9  
At3g57660.1 68416.m06424 DNA-directed RNA polymerase family prot...    26   9.9  
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id...    26   9.9  
At1g71760.1 68414.m08294 hypothetical protein                          26   9.9  

>At1g67490.1 68414.m07686 alpha-glucosidase I (GCS1) / KNOPF (KNF)
           identical to alpha-glucosidase I (GI:16506680,
           GI:13398928) [Arabidopsis thaliana]
          Length = 852

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 132 ERSKLIYTDNKGELITNVVNN 194
           E+SK IYT+ +  LI NVV N
Sbjct: 790 EKSKAIYTELRSNLIRNVVRN 810


>At3g60050.1 68416.m06706 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 473

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 168 ELITNVVNNLIRNNKMNCMEYAYQLWMQGSEDIVRDCF 281
           E++  ++ NL  +NK  C + AY+ ++   E   ++CF
Sbjct: 111 EVLVGILRNLSYDNKARCAKLAYRFFLWSGE---QECF 145


>At3g30550.1 68416.m03866 hypothetical protein includes At2g05890,
           At4g07450, At3g30630, At3g43100, At2g09960, At3g30550,
           At1g39430, At2g10460, At4g03640, At5g35250
          Length = 509

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 13/64 (20%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +3

Query: 3   KSAVVVLCLFAASLYAD-EGTAFNEILAEHLYNDVIIADYDSAVERSKLIYTDNKGELIT 179
           K+   +LC+   +++   +      +  +++ ++++  DYD+ V+ S LI  +    ++T
Sbjct: 400 KTFQFLLCVQRENIFGGYDSFTVARVYTDNIADEIVQEDYDAYVDPSSLISIEQDSLMLT 459

Query: 180 NVVN 191
           N V+
Sbjct: 460 NGVD 463


>At2g32860.1 68415.m04028 glycosyl hydrolase family 1 protein 
          Length = 613

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 148 STPITRVSSSQMS*TI*YETTR*TAWSTPTSSGCKAPRTSSGIV 279
           STP+ +V+SSQ++    YET     W+   ++      TS GIV
Sbjct: 413 STPLAKVNSSQLN----YETDLRVNWTDSQNNSPHLKTTSMGIV 452


>At4g21960.1 68417.m03178 peroxidase 42 (PER42) (P42) (PRXR1)
           identical to SP|Q9SB81 Peroxidase 42 precursor (EC
           1.11.1.7) (Atperox P42) (PRXR1) (ATP1a/ATP1b)
           {Arabidopsis thaliana}
          Length = 330

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +3

Query: 12  VVVLCLFAASLYADEGTAFNEILAEHLYNDVIIADYDSAVERSKLIYTDNK 164
           V +LCL+A S  ++  T     L  + Y D      D   E+ KL+Y  +K
Sbjct: 9   VAILCLWALSATSEAVTEAEPGLMMNFYKDTCPQAEDIVREQVKLLYKRHK 59


>At5g55900.1 68418.m06970 sucrase-related similar to sucrase
           [Solanum tuberosum] GI:1200257
          Length = 413

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 250 KAPRTSSGIVSRLSSHLS*LKTMLSLCTGRDG 345
           + PR  S ++S   S +   +T+L++C G DG
Sbjct: 95  RLPRLLSSVISARKSSMK-KETLLTICEGHDG 125


>At3g63330.1 68416.m07125 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 376

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 84  EHLYNDVIIADYDSAVERSKLIYTDNKGEL 173
           E  YND+ +  +   V  SKL+YT  + E+
Sbjct: 65  ESRYNDIWLVFHHEGVSLSKLMYTVEEAEI 94


>At3g57660.1 68416.m06424 DNA-directed RNA polymerase family protein
           similar to SP|O35134 DNA-directed RNA polymerase I
           largest subunit (EC 2.7.7.6) (RNA polymerase I 194 kDa
           subunit) (RPA194) {Mus musculus}; contains InterPro
           accession IPR000722: RNA polymerase, alpha subunit
          Length = 1670

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +3

Query: 156 DNKGELITNVVNNLIRN---NKMNCMEYAYQLWMQGSEDIVRDCFPVEFTLI 302
           ++K +L+ + V N++++   N+     +   LW  GSE I    F +E  L+
Sbjct: 297 NSKRDLLPSEVRNILKHLWQNEHEFCSFIGDLWQSGSEKIDYSMFFLESVLV 348


>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
            identical to auxin transport protein; BIG [Arabidopsis
            thaliana] GI:21779966; contains Pfam profiles PF02207:
            Putative zinc finger in N-recognin, PF00569: Zinc finger
            ZZ type
          Length = 5098

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 75   ILAEHLYNDVIIADYDSAVERSKLIYTDNKGEL-ITNVVNNLIRNNKMNCMEY 230
            IL+E   N++      +  +    + T ++G+L   N +NNL++   M C+E+
Sbjct: 3694 ILSELFENNIHQGPKTARAQARAALSTFSEGDLSAVNELNNLVQKKIMYCLEH 3746


>At1g71760.1 68414.m08294 hypothetical protein
          Length = 259

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = +3

Query: 114 DYDSAVERSKLIYTDNKGELITNVVNNLIRNNKMN 218
           D+DS  +R +L   ++  +++T + +N+ +  K+N
Sbjct: 105 DFDSVNDRRRLAGEEDDVKIVTEMPSNMFKRPKLN 139


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,363,697
Number of Sequences: 28952
Number of extensions: 129535
Number of successful extensions: 312
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)