Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301D02f
         (341 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23935.1 68414.m03020 apoptosis inhibitory protein 5 (API5)-r...    30   0.46 
At5g18280.1 68418.m02149 apyrase (APY2) identical to apyrase GI:...    28   1.4  
At2g02480.1 68415.m00187 DNA polymerase-related weak similarity ...    26   5.7  

>At1g23935.1 68414.m03020 apoptosis inhibitory protein 5
           (API5)-related contains weak hit to Pfam profile
           PF05918: Apoptosis inhibitory protein 5 (API5)
          Length = 660

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -2

Query: 148 VFIDRPINFKNCYKTTCSSKL--VENKGIPN*YRYSTIEFLCSDFHDFSLD 2
           + +DR     +CY  T    L  V++ GIP   R     FLC+D+H  S D
Sbjct: 410 ILVDRHGRVHHCYGGTIEKALCHVQSHGIP---RDVVTNFLCTDYHPPSAD 457


>At5g18280.1 68418.m02149 apyrase (APY2) identical to apyrase
           GI:6006801, GI:7672685 from [Arabidopsis thaliana]
          Length = 472

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 136 RPINFKNCYKTTCSSKLVENKGIPN*YRYSTIEFLCSD 23
           RP++F+   K  CS KL E K          + +LC D
Sbjct: 386 RPMDFEKAAKKACSMKLEEGKSTFPLVEEENLPYLCMD 423


>At2g02480.1 68415.m00187 DNA polymerase-related weak similarity to
           DNA polymerase III holoenzyme tau subunit [Thermus
           thermophilus] GI:2583049
          Length = 1218

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 8/16 (50%), Positives = 15/16 (93%)
 Frame = -2

Query: 118 NCYKTTCSSKLVENKG 71
           NCYK++ SS+++E++G
Sbjct: 874 NCYKSSSSSQMIESEG 889


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,497,279
Number of Sequences: 28952
Number of extensions: 72420
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 409426656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)