Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0113.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c...    29   3.1  
At2g37860.2 68415.m04648 expressed protein                             28   4.1  
At2g37860.1 68415.m04647 expressed protein                             28   4.1  

>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
           contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
           domain and PF00098: Zinc knuckle
          Length = 301

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -1

Query: 517 LTIGE-LGTGPPLEVDGIDKLDIEFAAXDGG--DQREGGANGGDGNCSNC 377
           LT+GE +     L  DG  K  IE  A  GG  +++E  + G  GNC NC
Sbjct: 51  LTLGESVEYEIALGSDGKTKA-IEVTAPGGGSLNKKENSSRGSGGNCFNC 99


>At2g37860.2 68415.m04648 expressed protein
          Length = 432

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -1

Query: 571 GFSQSXRCKNDGQ*IVI-RLTIGELGTGPPLEVDGIDKLDIEFAAXDGGDQREGGANGGD 395
           GF+ + + K +G   ++ +  +  LGT     +D    +   F   DG     GG NGG+
Sbjct: 73  GFAATEQIKGEGDNSILGKDNVRNLGTDQLENLDIDGNVGDGFNGSDGNGGGGGGGNGGE 132

Query: 394 GN 389
           G+
Sbjct: 133 GD 134


>At2g37860.1 68415.m04647 expressed protein
          Length = 347

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -1

Query: 571 GFSQSXRCKNDGQ*IVI-RLTIGELGTGPPLEVDGIDKLDIEFAAXDGGDQREGGANGGD 395
           GF+ + + K +G   ++ +  +  LGT     +D    +   F   DG     GG NGG+
Sbjct: 73  GFAATEQIKGEGDNSILGKDNVRNLGTDQLENLDIDGNVGDGFNGSDGNGGGGGGGNGGE 132

Query: 394 GN 389
           G+
Sbjct: 133 GD 134


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,931,723
Number of Sequences: 28952
Number of extensions: 170775
Number of successful extensions: 600
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)