Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0111.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g27920.1 68414.m03421 microtubule associated protein (MAP65/A...    28   4.1  
At1g61900.2 68414.m06984 expressed protein contains similarity t...    27   7.2  
At1g61900.1 68414.m06983 expressed protein contains similarity t...    27   7.2  

>At1g27920.1 68414.m03421 microtubule associated protein
           (MAP65/ASE1) family protein low similarity to protein
           regulating cytokinesis 1 (PRC1) [Homo sapiens]
           GI:2865521; contains Pfam profile PF03999: Microtubule
           associated protein (MAP65/ASE1 family)
          Length = 592

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
 Frame = +1

Query: 127 NENIQ*HSIYICAVRHFYISVPTD--LVVTILYDSEYDNITIGLS*SCRVLSVLCEVLMA 300
           NE +Q   IYICA+R    ++ T+  +++T ++ S  D   I  + S  +L  L   +++
Sbjct: 213 NERLQKVDIYICAIRDLSATLGTEASMIITKIHPSLNDLYGISKNISDDILKKLNGTVVS 272

Query: 301 *GVTKRILLKYKSHTNVVKVNRW 369
               K   L+   H      N W
Sbjct: 273 LEEEKHKRLEKLHHLGRALSNLW 295


>At1g61900.2 68414.m06984 expressed protein contains similarity to
           glutamic acid/alanine-rich protein GI:6707830 from
           [Trypanosoma congolense]
          Length = 413

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +1

Query: 358 VNRWIAIRIRPENLRSTALTMASVSKFSQIEPVSSPTRPRVTG 486
           VNRW+A ++ P  ++ T   +A+  K +++ P+  P    + G
Sbjct: 233 VNRWLATKLDPSRVKETLRGLAN-CKINRVCPLVFPHMKHIGG 274


>At1g61900.1 68414.m06983 expressed protein contains similarity to
           glutamic acid/alanine-rich protein GI:6707830 from
           [Trypanosoma congolense]
          Length = 433

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +1

Query: 358 VNRWIAIRIRPENLRSTALTMASVSKFSQIEPVSSPTRPRVTG 486
           VNRW+A ++ P  ++ T   +A+  K +++ P+  P    + G
Sbjct: 233 VNRWLATKLDPSRVKETLRGLAN-CKINRVCPLVFPHMKHIGG 274


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,576,102
Number of Sequences: 28952
Number of extensions: 222549
Number of successful extensions: 441
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)