Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0095.Seq
         (705 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65320.1 68414.m07407 CBS domain-containing protein contains ...    33   0.24 
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic...    32   0.43 
At3g17920.1 68416.m02282 leucine-rich repeat family protein cont...    29   4.0  
At2g41830.1 68415.m05169 cyclin-related contains Pfam profile PF...    28   6.9  

>At1g65320.1 68414.m07407 CBS domain-containing protein contains
           Pfam profile PF00571: CBS domain
          Length = 425

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +1

Query: 442 IPITRPRKSPVSLFFVTTSPCRGG*FARLLPSLDVVA-VSQAPSPESNPDSPLPVTTMVV 618
           IP+ R R +P    FV  S  R   F  +L SLD+VA +++    +      +PV+ +V 
Sbjct: 44  IPVWRKRTTPSLPGFVENSEMRQQRFVGILNSLDIVAFLAKTECLQEEKAMKIPVSEVVS 103

Query: 619 AETTIRKLI 645
            + T+ K +
Sbjct: 104 PDNTLLKQV 112


>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
           to gi_11935088_gb_AAG41964
          Length = 209

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +1

Query: 445 PITRPRKSPVSLFFVTTSPCRGG*FARLLPSLDVVAVSQAPSPESNPDSPLPVT 606
           PI+ P KSP +    TTSP +         +      + A SP  +P SP PV+
Sbjct: 24  PISSPTKSPTTPSAPTTSPTKSPAVTSPTTAPAKTPTASASSPVESPKSPAPVS 77


>At3g17920.1 68416.m02282 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 962

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 523 RLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAE 624
           RLLPSL VV+   +P+ +  P S LP + + V E
Sbjct: 84  RLLPSLKVVSSLPSPARDPTPLSLLPFSKLKVLE 117


>At2g41830.1 68415.m05169 cyclin-related contains Pfam profile
           PF02984: Cyclin, C-terminal domain
          Length = 1025

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +1

Query: 238 ERRLTEICSANVSVSPRM-RCTDSAAHKCNYELFNRNNFSIRYWSWNYRGCWHQTCPPIV 414
           +R++ ++C      + RM + +DS  H+C  EL N N  S +     YR     TC   +
Sbjct: 55  DRKIGKLCEYAAKNAVRMPKISDSLEHRCYKELRNENFHSAKIAMCIYRRLL-VTCKEQI 113

Query: 415 P 417
           P
Sbjct: 114 P 114


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,219,562
Number of Sequences: 28952
Number of extensions: 321201
Number of successful extensions: 835
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)