Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0094.Seq
         (659 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g23050.1 68415.m02748 phototropic-responsive NPH3 family prot...    31   0.68 
At2g14820.1 68415.m01679 phototropic-responsive NPH3 family prot...    30   1.6  
At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly ...    29   2.1  
At4g37590.1 68417.m05320 phototropic-responsive NPH3 family prot...    29   2.7  
At4g36800.1 68417.m05220 RUB1-conjugating enzyme, putative (RCE1...    28   6.3  
At2g40280.1 68415.m04958 dehydration-responsive family protein s...    28   6.3  

>At2g23050.1 68415.m02748 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 481

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 23/78 (29%), Positives = 33/78 (42%)
 Frame = -2

Query: 535 PIFAIKNGTNKWLAIDFNSEGIAPRNKNQTRKIIICEITGGRTSCESAAHFCHEAVINAF 356
           P+ +      K +A   N E      KNQ  +I I EI GG  + E    FC+   +   
Sbjct: 46  PLLSKSGFLQKHIATSKNEE----EKKNQIDEIDISEIPGGSVAFEICVKFCYGITVTLN 101

Query: 355 RFDGWGSRCTVKAETLEL 302
            ++    RC   AE LE+
Sbjct: 102 AYNVVAVRCA--AEFLEM 117


>At2g14820.1 68415.m01679 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 634

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -2

Query: 472 IAPRNKNQTRKIIICEITGGRTSCESAAHFCHEAVINAFRFDGWGSRCTVK 320
           ++  +KN    I I  I GG T+ E+ A FC+   +    ++   +RC  +
Sbjct: 58  LSSTDKNNIDDIDISGIPGGPTAFETCAKFCYGMTVTLSAYNVVATRCAAE 108


>At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly
           identical to DNA Helicase [Arabidopsis thaliana]
           GI:11121445
          Length = 705

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +3

Query: 42  LKVMQATPNKVNRDRKFLQKVIKVNN 119
           LK++  TP KV++ ++F+ K+ K +N
Sbjct: 182 LKILYVTPEKVSKSKRFMSKLEKCHN 207


>At4g37590.1 68417.m05320 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 580

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -2

Query: 442 KIIICEITGGRTSCESAAHFCHEAVINAFRFDGWGSRCTVKAETLEL 302
           +I I EI GG  S E  A FC+   +    ++   +RC   AE LE+
Sbjct: 79  EIEIAEIPGGPASFEICAKFCYGMTVTLNAYNVVAARCA--AEFLEM 123


>At4g36800.1 68417.m05220 RUB1-conjugating enzyme, putative (RCE1)
           this gene is frameshifted and may be a pseudogene;
           identical over first 79 amino acids to RUB1 conjugating
           enzyme [Arabidopsis thaliana] GI:6635457
          Length = 113

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
 Frame = +2

Query: 554 DTNAPSS---SYPLGHDDVYNFDISI 622
           + N PSS   S+P G DD+ NF++SI
Sbjct: 41  ELNLPSSCSISFPNGKDDLMNFEVSI 66


>At2g40280.1 68415.m04958 dehydration-responsive family protein
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 589

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 201 SIRYVDELVAHLVLSGYRARRHLQHKCRHLP 293
           S+ Y+  L  +  +   ++RRH++H+ RH P
Sbjct: 88  SVDYIPCLDNYAAIKQLKSRRHMEHRERHCP 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,237,320
Number of Sequences: 28952
Number of extensions: 229370
Number of successful extensions: 624
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)