Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0092.Seq
(672 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g14980.1 68414.m01790 10 kDa chaperonin (CPN10) identical to ... 58 5e-09
At1g23100.1 68414.m02888 10 kDa chaperonin, putative similar to ... 53 2e-07
At5g20720.2 68418.m02461 20 kDa chaperonin, chloroplast (CPN21) ... 50 1e-06
At5g20720.1 68418.m02460 20 kDa chaperonin, chloroplast (CPN21) ... 50 1e-06
At2g44650.1 68415.m05557 chloroplast chaperonin 10 (cpn10) ident... 38 0.005
At3g60210.1 68416.m06728 chloroplast chaperonin 10, putative sim... 38 0.006
At3g16220.1 68416.m02047 expressed protein similar to CGI-18 pro... 31 0.70
At3g23890.1 68416.m03002 DNA topoisomerase, ATP-hydrolyzing / DN... 30 1.6
At3g52480.1 68416.m05771 expressed protein 29 2.1
At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (... 29 3.7
At1g72120.1 68414.m08336 proton-dependent oligopeptide transport... 29 3.7
At1g22540.1 68414.m02815 proton-dependent oligopeptide transport... 28 6.5
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 27 8.6
>At1g14980.1 68414.m01790 10 kDa chaperonin (CPN10) identical to
SP:P34893 from [Arabidopsis thaliana]
Length = 98
Score = 58.0 bits (134), Expect = 5e-09
Identities = 27/47 (57%), Positives = 33/47 (70%)
Frame = +1
Query: 265 ENGDFIPVQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILAKI 405
++G IPV V GD VLLPEYGGT+V L E EYHLFR+ D+L +
Sbjct: 51 KDGKLIPVSVKEGDTVLLPEYGGTQVKL--GENEYHLFRDEDVLGTL 95
Score = 48.4 bits (110), Expect = 4e-06
Identities = 23/51 (45%), Positives = 35/51 (68%)
Frame = +2
Query: 116 VKRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPEPEKK 268
+KRL+P +R+L++R KT GI++PEK+ SK+ G+V+AVGP K
Sbjct: 2 MKRLIPTFNRILVQRVIQPAKTESGILLPEKS-SKLNSGKVIAVGPGSRDK 51
>At1g23100.1 68414.m02888 10 kDa chaperonin, putative similar to 10
kDa chaperonin SP:P34893 from [Arabidopsis thaliana]
Length = 97
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/45 (55%), Positives = 33/45 (73%)
Frame = +1
Query: 271 GDFIPVQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILAKI 405
G+ IPV V GD VLLPE+GGT+V L EKE+ L+R+ DI+A +
Sbjct: 53 GNLIPVSVKEGDNVLLPEFGGTQVKL--GEKEFLLYRDEDIMATL 95
Score = 46.8 bits (106), Expect = 1e-05
Identities = 22/45 (48%), Positives = 34/45 (75%)
Frame = +2
Query: 119 KRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGP 253
KRL+P L+RVL+++ +KT GI++PEK+ S++ G V+AVGP
Sbjct: 3 KRLIPTLNRVLVEKILPPSKTVSGILLPEKS-SQLNSGRVIAVGP 46
>At5g20720.2 68418.m02461 20 kDa chaperonin, chloroplast (CPN21)
(CHCPN10) (CPN20) identical to chloroplast 20 kDa
chaperonin, chloroplast precursor (Protein Cpn21),
chloroplast protein Cpn10, chloroplast chaperonin 10
(Ch-CPN10), SP|O65282 from [Arabidopsis thaliana];
identical to cDNA chaperonin 20 GI:14587372
Length = 253
Score = 50.0 bits (114), Expect = 1e-06
Identities = 26/40 (65%), Positives = 29/40 (72%)
Frame = +2
Query: 131 PLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVG 250
PL DRVL+K EA KT GGI++P AQSK GEVVAVG
Sbjct: 64 PLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVG 103
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/46 (54%), Positives = 31/46 (67%)
Frame = +2
Query: 116 VKRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGP 253
+K L PL DRV IK AEA KTAGG+++ E + K G V+AVGP
Sbjct: 157 IKDLKPLNDRVFIKVAEAEEKTAGGLLLTETTKEKPSIGTVIAVGP 202
>At5g20720.1 68418.m02460 20 kDa chaperonin, chloroplast (CPN21)
(CHCPN10) (CPN20) identical to chloroplast 20 kDa
chaperonin, chloroplast precursor (Protein Cpn21),
chloroplast protein Cpn10, chloroplast chaperonin 10
(Ch-CPN10), SP|O65282 from [Arabidopsis thaliana];
identical to cDNA chaperonin 20 GI:14587372
Length = 253
Score = 50.0 bits (114), Expect = 1e-06
Identities = 26/40 (65%), Positives = 29/40 (72%)
Frame = +2
Query: 131 PLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVG 250
PL DRVL+K EA KT GGI++P AQSK GEVVAVG
Sbjct: 64 PLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVG 103
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/46 (54%), Positives = 31/46 (67%)
Frame = +2
Query: 116 VKRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGP 253
+K L PL DRV IK AEA KTAGG+++ E + K G V+AVGP
Sbjct: 157 IKDLKPLNDRVFIKVAEAEEKTAGGLLLTETTKEKPSIGTVIAVGP 202
>At2g44650.1 68415.m05557 chloroplast chaperonin 10 (cpn10)
identical to chloroplast chaperonin 10 GI:14041813 from
[Arabidopsis thaliana]
Length = 139
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/47 (36%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Frame = +2
Query: 122 RLVPLLDRVLIKRAEAITKTAGGIVIPEKAQ--SKVLHGEVVAVGPE 256
++VP DRVL++ + K++GG+++P+ A + L GE+++VG E
Sbjct: 51 KVVPQADRVLVRLEDLPIKSSGGVLLPKAAVKFERYLTGEIISVGSE 97
>At3g60210.1 68416.m06728 chloroplast chaperonin 10, putative
similar to chloroplast chaperonin 10 GI:14041813 from
[Arabidopsis thaliana]
Length = 138
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Frame = +2
Query: 122 RLVPLLDRVLIKRAEAITKTAGGIVIPEKAQ--SKVLHGEVVAVGPE 256
++VP DRVL++ K++GG+++P+ A + L GEVV+VG E
Sbjct: 50 KVVPQADRVLVRLEVLPEKSSGGVLLPKSAVKFERYLTGEVVSVGSE 96
>At3g16220.1 68416.m02047 expressed protein similar to CGI-18
protein GB:AAD27727 [Homo sapiens]
Length = 257
Score = 31.1 bits (67), Expect = 0.70
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = -2
Query: 491 TISTFHLRTATTKLTELESHVKATIIQFSIFASMSDSLK 375
T TFHL KL ES VKA I SIF+++ +LK
Sbjct: 88 TPKTFHLTVVMLKLENNESVVKAQNILQSIFSNVRQALK 126
>At3g23890.1 68416.m03002 DNA topoisomerase, ATP-hydrolyzing / DNA
topoisomerase II / DNA gyrase (TOP2) identical to
SP|P30182 DNA topoisomerase II (EC 5.99.1.3) {Arabidopsis
thaliana}
Length = 1473
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +2
Query: 158 RAEAITKTAGGIVIPEK-AQSKVLHGEVVAVGPEPEKKME--TSSPF 289
R A TK A P K + V EV+A+G PEKK+ SSPF
Sbjct: 1350 RKPAATKAAKPPAAPRKRGKQTVASTEVLAIGVSPEKKVRKMRSSPF 1396
>At3g52480.1 68416.m05771 expressed protein
Length = 209
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -1
Query: 366 FFLIIFKAYFSTAVFWKKNFITHTNLNGDEVSIFFSGSGP-TATTSPCKTL 217
F L+ A F+ ++WK+ F ++ G E F S G TAT P K L
Sbjct: 16 FCLVAVTAQFAYVLWWKRRF-RRRSIAGSERDAFSSRGGDLTATPPPSKEL 65
>At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (Atm)
identical to ataxia-telangiectasia mutated protein (Atm)
[Arabidopsis thaliana] GI:7529272; contains Pfam profile
PF00855: PWWP domain; contains GA donor splice site at
exon 73
Length = 3255
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = +2
Query: 188 GIVIPEKAQSKVLHG-EVVAVGPEPEKKMET 277
GI + ++ K++ +V+AVGP+P +KMET
Sbjct: 1885 GIKLVTSSKEKLVTAKDVLAVGPQPRQKMET 1915
>At1g72120.1 68414.m08336 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 1095
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +2
Query: 92 LKIEMANAVKRLVPLLDRVLIKRAEAITKTAGGIVIPEK-AQSKVLHGEVVAVGPEPE-K 265
L++ ++ ++ VP+ DRVL+ +ITK GI ++ VL + V E K
Sbjct: 900 LQVLISISIVLFVPIYDRVLVPIGRSITKDPCGITTLKRIGTGMVLATLTMVVAALVESK 959
Query: 266 KMETSSPFKLV 298
++ET+ + L+
Sbjct: 960 RLETAKEYGLI 970
>At1g22540.1 68414.m02815 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 557
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +2
Query: 128 VPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHG--EVVAVGPEPEKKMETSSPFKLV 298
+P+ DRVLI A + T GGI + ++ + + +V K+++T++ + LV
Sbjct: 374 IPIYDRVLIPIARSFTHKPGGITMLQRIGTGIFLSFLAMVVAALVEMKRLKTAADYGLV 432
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 27.5 bits (58), Expect = 8.6
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Frame = +2
Query: 95 KIEMANAVKRLVPLLDRVLIKRAEAITKTAG-GIVI--PEKAQSKVL-------HGEVVA 244
K E ++ P+ + +LIK + K AG G +I EK+ K + HG ++
Sbjct: 178 KPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKAVEFDGVEFHGRILT 237
Query: 245 VGPEPEKKMETSSPFKLVWV 304
V + K+++T + ++ WV
Sbjct: 238 VKLDDGKRLKTKAEQRVRWV 257
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,397,611
Number of Sequences: 28952
Number of extensions: 225342
Number of successful extensions: 532
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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