Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0091.Seq
(548 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g14030.1 68418.m01640 translocon-associated protein beta (TRA... 40 0.001
At3g11550.1 68416.m01409 integral membrane family protein simila... 31 0.67
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 29 2.7
At3g24900.1 68416.m03122 disease resistance family protein / LRR... 29 2.7
At5g56730.1 68418.m07080 peptidase M16 family protein / insulina... 28 3.6
At4g23740.1 68417.m03415 leucine-rich repeat transmembrane prote... 28 4.7
At3g25010.1 68416.m03126 disease resistance family protein conta... 28 4.7
At2g13620.1 68415.m01501 cation/hydrogen exchanger, putative (CH... 28 4.7
At4g37800.1 68417.m05349 xyloglucan:xyloglucosyl transferase, pu... 27 6.2
At3g25020.1 68416.m03127 disease resistance family protein conta... 27 6.2
At3g24982.1 68416.m03125 leucine-rich repeat family protein, 5' ... 27 8.3
At2g27650.1 68415.m03351 ubiquitin carboxyl-terminal hydrolase-r... 27 8.3
At1g74690.1 68414.m08650 calmodulin-binding family protein low s... 27 8.3
>At5g14030.1 68418.m01640 translocon-associated protein beta (TRAPB)
family protein low similarity to SP|P23438
Translocon-associated protein, beta subunit precursor
(TRAP-beta) (Signal sequence receptor beta subunit)
{Canis familiaris}; contains Pfam profile PF05753:
Translocon-associated protein beta (TRAPB)
Length = 195
Score = 39.5 bits (88), Expect = 0.001
Identities = 23/83 (27%), Positives = 44/83 (53%)
Frame = +1
Query: 10 SKLRMAAKLLYFVLFIAAAVSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSA 189
+KL ++A ++ + ++A+ + + P + ++ K LN+ + V Y ++N GS+
Sbjct: 6 AKLLISAMAVF--MLVSASFATSEVPFM--VVHKKATLNRLKSGAERVSVSYDIYNQGSS 61
Query: 190 PAVEVKLVDNGFHPDVFTVVGGN 258
A +V L DN + F VV GN
Sbjct: 62 SAYDVTLTDNSWDKKTFEVVNGN 84
>At3g11550.1 68416.m01409 integral membrane family protein similar
to unknown protein GB:AAD26967 [Arabidopsis thaliana];
contains TIGRFAM TIGR01569 : plant integral membrane
protein TIGR01569; contains Pfam PF04535 : Domain of
unknown function (DUF588)
Length = 204
Score = 30.7 bits (66), Expect = 0.67
Identities = 17/63 (26%), Positives = 32/63 (50%)
Frame = +1
Query: 34 LLYFVLFIAAAVSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVKLV 213
L +F F+ S DD P +++ ++ YLV ++ I V L + +AP + + ++
Sbjct: 72 LPFFTQFLQFEASYDDLPTFQFFVIAMALVGGYLVLSLPISVVTILRPLATAPRLLLLVL 131
Query: 214 DNG 222
D G
Sbjct: 132 DTG 134
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 297 VSHVVTVRSNKYGYFNFSXAEVTYKASEDATDV 395
+S +T RS YG+ F A+ +A ED+T +
Sbjct: 49 ISDKLTRRSKGYGFVTFKDAKAATRACEDSTPI 81
>At3g24900.1 68416.m03122 disease resistance family protein / LRR
family protein contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611; similar to Cf-2.2
[Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
Length = 884
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = -1
Query: 269 FXGQLPPTTVNTSGWKPLSTSFTSTAGALPTLNNVYFTSISIFSTKYLFST 117
F GQ+PPT N + L G+LP + N+ SI S + T
Sbjct: 234 FFGQVPPTISNLTQLTELYLPLNDFTGSLPLVQNLTKLSILHLSDNHFSGT 284
>At5g56730.1 68418.m07080 peptidase M16 family protein / insulinase
family protein contains Pfam domain, PF05193: Peptidase
M16 inactive domain
Length = 956
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +3
Query: 183 ERTGC*SETRGQRLPSGRVYCSRWQLTXEIDRIAPQTNVSHVVTVRS 323
ER E RG R +GR+ S WQL E + A + + +RS
Sbjct: 165 ERGAVMEEYRGNRNATGRMQDSHWQLMMEGSKYAERLPIGLEKVIRS 211
>At4g23740.1 68417.m03415 leucine-rich repeat transmembrane protein
kinase, putative receptor-like protein kinase -
Arabidopsis thaliana RKL1, PID:g4008006
Length = 638
Score = 27.9 bits (59), Expect = 4.7
Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 1/103 (0%)
Frame = -1
Query: 485 PIEDMRGELSIIIFEGYDGSLSWSTADRILDVCGVFAGFVCDFRXAEVEIAVLIGPDSHY 306
P+ED R L + SL+W+ + VC ++ G C+ + +
Sbjct: 26 PLEDKRALLEFLTIMQPTRSLNWNETSQ---VCNIWTGVTCNQDGSRI------------ 70
Query: 305 MGYVSLRCNPIDFXGQLPPTTVN-TSGWKPLSTSFTSTAGALP 180
+++R + GQ+PP T++ S + LS +G P
Sbjct: 71 ---IAVRLPGVGLNGQIPPNTISRLSALRVLSLRSNLISGEFP 110
>At3g25010.1 68416.m03126 disease resistance family protein contains
leucine rich-repeat (LRR) domains (23 copies)
Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-5D
[Lycopersicon esculentum] gi|3894393|gb|AAC78596
Length = 881
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -1
Query: 269 FXGQLPPTTVNTSGWKPLSTSFTSTAGALPTLNNVYFTSISIFS 138
F GQ+PPT N + L G+LP + N+ T +SI +
Sbjct: 233 FFGQVPPTISNLTQLTELYLPLNDFTGSLPLVQNL--TKLSILA 274
>At2g13620.1 68415.m01501 cation/hydrogen exchanger, putative
(CHX15) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 821
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 43 FVLFIAAAVSADDEPVLARLLVSKQVLN 126
++LF+ A+S PVLAR+L +++N
Sbjct: 165 YILFLGVALSVTAFPVLARILAELKLIN 192
>At4g37800.1 68417.m05349 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
N-terminal partial sequence of endo-xyloglucan
transferase GI:2244732 from [Gossypium hirsutum]
Length = 293
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 339 NSRTYWTGQSLHGIR*FEVQSYRFPR 262
NS+ +W G + H + E +SYR+ R
Sbjct: 242 NSKNWWEGSAYHQLSPVEARSYRWVR 267
>At3g25020.1 68416.m03127 disease resistance family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
esculentum] gi|3894387|gb|AAC78593
Length = 890
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 269 FXGQLPPTTVNTSGWKPLSTSFTSTAGALPTLNNVYFTSI 150
F GQ+PPT N + L G+LP + N+ SI
Sbjct: 233 FFGQVPPTISNLTQLTELYLPLNDFTGSLPLVQNLTKLSI 272
>At3g24982.1 68416.m03125 leucine-rich repeat family protein, 5'
fragment contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611 (19 copies); contains
similarity to GB:AAD13301 from [Lycopersicon esculentum]
Length = 681
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 269 FXGQLPPTTVNTSGWKPLSTSFTSTAGALPTLNNVYFTSI 150
F GQ+PPT N + L G+LP + N+ SI
Sbjct: 264 FFGQVPPTISNLTQLTELYLPLNHFTGSLPLVQNLTKLSI 303
>At2g27650.1 68415.m03351 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF04780:
Protein of unknown function (DUF629), PF04781: Protein
of unknown function (DUF627)
Length = 1106
Score = 27.1 bits (57), Expect = 8.3
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 76 DDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVK-LVDNGFHPDV 237
D A+LL+ L + EN++ L+K N+ + VE+K L+ F P+V
Sbjct: 127 DASESFAQLLLEN--LKNDMKENLETLIKDAESNIADSKTVELKGLLQQDFEPEV 179
>At1g74690.1 68414.m08650 calmodulin-binding family protein low
similarity to SF16 protein [Helianthus annuus]
GI:560150; contains Pfam profile PF00612: IQ
calmodulin-binding motif
Length = 587
Score = 27.1 bits (57), Expect = 8.3
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +1
Query: 367 TKPAKTPQTSNIRSAVLQEREPS*PSKIMIESSPRISSIGRHSQL*PSVPSH 522
TK KTP+ +N ++ +E + S + R S G H + PS+PS+
Sbjct: 451 TKEEKTPKPNNKENSAGKENQKSRKKGSATSKTEREESNGHH-ETSPSIPSY 501
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,763,173
Number of Sequences: 28952
Number of extensions: 223243
Number of successful extensions: 624
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -