Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0013.Seq
         (269 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19580.1 68416.m02483 zinc finger (C2H2 type) protein 2 (AZF2...    25   5.2  

>At3g19580.1 68416.m02483 zinc finger (C2H2 type) protein 2 (AZF2)
           identical to Cys2/His2-type zinc finger protein 2
           [Arabidopsis thaliana] gi|6009885|dbj|BAA85107
          Length = 273

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 91  CLMSFFRTRPIQPRFHLRSSSL 26
           CL+   + +P Q RFH +S SL
Sbjct: 74  CLLMLAKDQPSQTRFHQQSQSL 95


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,568,704
Number of Sequences: 28952
Number of extensions: 68787
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 12,070,560
effective HSP length: 68
effective length of database: 10,101,824
effective search space used: 212138304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)