Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0082
         (526 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13800.1 68417.m02139 permease-related contains 9 predicted t...    29   1.4  
At4g30180.1 68417.m04291 expressed protein                             29   1.9  
At5g67370.1 68418.m08495 expressed protein similar to unknown pr...    27   5.8  
At5g57180.2 68418.m07143 expressed protein ; supporting cDNA gi|...    27   5.8  
At5g57180.1 68418.m07142 expressed protein ; supporting cDNA gi|...    27   5.8  
At5g17600.1 68418.m02064 zinc finger (C3HC4-type RING finger) fa...    27   5.8  
At1g80440.1 68414.m09419 kelch repeat-containing F-box family pr...    27   5.8  

>At4g13800.1 68417.m02139 permease-related contains 9 predicted
           transmembrane domains; contains Pfam PF05653: Protein of
           unknown function (DUF803); identified as COG0697,
           Permeases of the drug/metabolite transporter (DMT)
           superfamily
          Length = 336

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 196 HKSSKMGVSTSVGGRTTHNPGTVEVSGFLGASKT 95
           HK+  MG STS+ G T+H+P    V    G+S++
Sbjct: 294 HKTKDMGNSTSLRGSTSHSPRDTPVFINSGSSRS 327


>At4g30180.1 68417.m04291 expressed protein 
          Length = 158

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +3

Query: 51  SNLTTTTRSVSPGLRVLDAPRK 116
           SN TTTT S S G+R+L+ P K
Sbjct: 80  SNPTTTTSSSSDGIRILERPDK 101


>At5g67370.1 68418.m08495 expressed protein similar to unknown
           protein (gb|AAC18972.1)
          Length = 327

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 133 YQDCGWFCRQRWCSPPSCWTCDR 201
           Y++ GW+  Q W  PP     DR
Sbjct: 185 YEESGWYDGQMWVKPPEVLARDR 207


>At5g57180.2 68418.m07143 expressed protein ; supporting cDNA
           gi|13991645|gb|AF359387.1|AF359387
          Length = 435

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 48  PSNLTTTTRSVSPGLRVLDAPRKPL 122
           PS+ TTTTR+ SP   + ++   PL
Sbjct: 27  PSSSTTTTRATSPSSTISESSNSPL 51


>At5g57180.1 68418.m07142 expressed protein ; supporting cDNA
           gi|13991645|gb|AF359387.1|AF359387
          Length = 424

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 48  PSNLTTTTRSVSPGLRVLDAPRKPL 122
           PS+ TTTTR+ SP   + ++   PL
Sbjct: 27  PSSSTTTTRATSPSSTISESSNSPL 51


>At5g17600.1 68418.m02064 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 362

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 388 QHEQRSTTSVAIINHNHVGFNTNIQRIN 471
           +H Q S++    +NHN  GF ++ QRI+
Sbjct: 84  RHHQTSSSETLNLNHNGEGFFSSTQRIS 111


>At1g80440.1 68414.m09419 kelch repeat-containing F-box family
           protein similar to SP|Q9ER30 Kelch-related protein 1
           (Sarcosin) {Rattus norvegicus}; contains Pfam profiles
           PF01344: Kelch motif, PF00646: F-box domain
          Length = 354

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +2

Query: 158 ANAGAHPHLAGLVIALTNGRTSIC--GASLLTNTPP*PRITAGEPGTPRLVS 307
           + A   P  +G +IA    R S+   G+ L T  PP P  T G P   RLVS
Sbjct: 60  SQARVDPAGSGKIIATPEYRISVLESGSGLWTELPPIPGQTKGLPLFCRLVS 111


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,432,463
Number of Sequences: 28952
Number of extensions: 187377
Number of successful extensions: 630
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)