Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0066
         (561 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27020.1 68418.m03223 hypothetical protein                          28   3.7  
At3g09560.2 68416.m01136 lipin family protein contains Pfam prof...    28   4.9  
At3g09560.1 68416.m01135 lipin family protein contains Pfam prof...    28   4.9  
At1g03440.1 68414.m00324 leucine-rich repeat family protein cont...    28   4.9  
At5g48770.1 68418.m06035 disease resistance protein (TIR-NBS-LRR...    27   8.6  

>At5g27020.1 68418.m03223 hypothetical protein 
          Length = 164

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = -1

Query: 216 KLLLGKASYITRLGNMTWHDTKVSKKDLGMDKDFPMRSFVKKLKDMSGMVISV 58
           K+ L K S ITR         K  KK+  M +DF  R  V ++K M+ ++  V
Sbjct: 7   KIKLPKPSEITRRHKKEADMGKKIKKEENMKRDFIRRRMVFRVKKMTSVISGV 59


>At3g09560.2 68416.m01136 lipin family protein contains Pfam
           profile: PF04571 lipin, N-terminal conserved region
          Length = 904

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 175 EYDMARYQSVQ-EGLGDGQGFSDEVIC*KIKGYV 77
           EY  AR+ ++  E  GD QG   EV+   I G++
Sbjct: 166 EYGSARFDNLNVESYGDSQGSDSEVVLVSIDGHI 199


>At3g09560.1 68416.m01135 lipin family protein contains Pfam
           profile: PF04571 lipin, N-terminal conserved region
          Length = 904

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 175 EYDMARYQSVQ-EGLGDGQGFSDEVIC*KIKGYV 77
           EY  AR+ ++  E  GD QG   EV+   I G++
Sbjct: 166 EYGSARFDNLNVESYGDSQGSDSEVVLVSIDGHI 199


>At1g03440.1 68414.m00324 leucine-rich repeat family protein
           contains leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611
          Length = 397

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 176 PNRVMYEAFPNNNLPAGNIFFLEAVQPSPAVRLVSVELLY 295
           P RV   AFP  NL     FF   +QP+  V + +V+L Y
Sbjct: 257 PARVF--AFPITNLQLQRNFFFGLIQPANQVTISTVDLSY 294


>At5g48770.1 68418.m06035 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1190

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 462 Y*KNSISLGLFRFFDDLRIPRLNLLESQMESLP 364
           Y K+S S   + F D L +  LNL+   +ES+P
Sbjct: 787 YRKDSASFQCYSFSDFLWLTELNLINLNIESIP 819


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,607,152
Number of Sequences: 28952
Number of extensions: 242194
Number of successful extensions: 584
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)