Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0064
         (278 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60100.1 68418.m07535 pseudo-response regulator 3 (APRR3) ide...    27   1.4  
At5g10370.1 68418.m01203 helicase domain-containing protein / IB...    27   1.4  
At1g74350.1 68414.m08613 intron maturase, type II family protein...    25   5.7  
At5g09910.1 68418.m01146 GTP-binding protein-related contains we...    25   7.5  
At4g14150.1 68417.m02183 phragmoplast-associated kinesin-related...    25   7.5  
At4g01020.1 68417.m00137 helicase domain-containing protein / IB...    25   7.5  
At4g10770.1 68417.m01757 oligopeptide transporter OPT family pro...    25   9.9  
At4g00500.2 68417.m00069 lipase class 3 family protein / calmodu...    25   9.9  
At4g00500.1 68417.m00068 lipase class 3 family protein / calmodu...    25   9.9  
At2g23440.1 68415.m02798 expressed protein                             25   9.9  
At1g26510.1 68414.m03231 F-box family protein contains F-box dom...    25   9.9  

>At5g60100.1 68418.m07535 pseudo-response regulator 3 (APRR3)
           identical to pseudo-response regulator 3 GI:10281008
           from [Arabidopsis thaliana]
          Length = 495

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -1

Query: 113 PKRSTALKRRWLASWCDCHEPLGTGNSS 30
           P R   LK  W   W  CH   G+G+ S
Sbjct: 169 PIRKNELKNLWQHVWRRCHSSSGSGSES 196


>At5g10370.1 68418.m01203 helicase domain-containing protein / IBR
           domain-containing protein / zinc finger protein-related
           similar to RNA-dependent ATPase/helicase Cdc28p
           [Schizosaccharomyces pombe] GI:1439562; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain, weak hit
           to PF00097: Zinc finger, C3HC4 type (RING finger),
           PF01485: IBR domain
          Length = 1775

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 111 WNCIHCCYIRRCKNIRTGLP 170
           W  IHC   R C+ +  GLP
Sbjct: 288 WRRIHCLIRRECRRLEDGLP 307


>At1g74350.1 68414.m08613 intron maturase, type II family protein
           similar to maturase [Arabidopsis thaliana] GI:6851020;
           contains Pfam profile: PF01348 Type II intron maturase
          Length = 753

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 146 QKHQDWSTSTTRLPSPWIKHSL 211
           QK + W+  T R+   W+ H L
Sbjct: 399 QKEEAWTLGTVRIGKKWLGHGL 420


>At5g09910.1 68418.m01146 GTP-binding protein-related contains weak
           similarity to GTP-binding protein yptV3.
           (Swiss-Prot:P36862) [Volvox carteri]
          Length = 431

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 31  DELPVPKGSWQSHHDANQR 87
           DELP P  +W   H  +QR
Sbjct: 225 DELPSPSSAWSLSHAPSQR 243


>At4g14150.1 68417.m02183 phragmoplast-associated kinesin-related
           protein (PAKRP1)
          Length = 1292

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +3

Query: 114 NCIHCCYIR-RCKNIRTGLPQLLASQV 191
           +C+  C +  RCKN+  GL     S++
Sbjct: 297 HCVFTCVVESRCKNVADGLSSFKTSRI 323


>At4g01020.1 68417.m00137 helicase domain-containing protein / IBR
           domain-containing protein / zinc finger protein-related
           similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
           helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
           contains Pfam profiles PF04408: Helicase associated
           domain (HA2), PF00271: Helicase conserved C-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger),
           PF01485: IBR domain
          Length = 1787

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 111 WNCIHCCYIRRCKNIRTGLP 170
           W  IH   +R C+ +  GLP
Sbjct: 285 WRRIHYLILRECRRLEDGLP 304


>At4g10770.1 68417.m01757 oligopeptide transporter OPT family
           protein similar to oligopeptide transporter Opt1p
           [Candida albicans] GI:2367386; contains Pfam profile
           PF03169: OPT oligopeptide transporter protein
          Length = 766

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = +3

Query: 75  CQPTSLQCCAPLWNCIHCCYIRRCKNIRTGLPQLLASQVPGLSI 206
           C+  + Q   P W  +  C +     +  G+   + +Q PGL+I
Sbjct: 466 CEYYNDQLQLPWWGVLLACTVAIIFTLPIGIITAITNQAPGLNI 509


>At4g00500.2 68417.m00069 lipase class 3 family protein /
           calmodulin-binding heat-shock protein-related 
          Length = 460

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 87  SLQCCAPLWNCIHC 128
           S+ CC P+  C++C
Sbjct: 2   SILCCVPVLECVYC 15


>At4g00500.1 68417.m00068 lipase class 3 family protein /
           calmodulin-binding heat-shock protein-related 
          Length = 460

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 87  SLQCCAPLWNCIHC 128
           S+ CC P+  C++C
Sbjct: 2   SILCCVPVLECVYC 15


>At2g23440.1 68415.m02798 expressed protein 
          Length = 82

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 8   VTSSPPPWMNYQCPKAHGSRTMMPT 82
           V SS PP    + P +HG  T  PT
Sbjct: 44  VLSSSPPTEPLESPPSHGVDTFRPT 68


>At1g26510.1 68414.m03231 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 686

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 78  QPTSLQCCAPLWNCIH 125
           QP +L   AP++NC+H
Sbjct: 70  QPCTLIASAPIFNCLH 85


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,618,738
Number of Sequences: 28952
Number of extensions: 81842
Number of successful extensions: 211
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 231676056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)