Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0063
         (812 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58160.1 68418.m07280 formin homology 2 domain-containing pro...    29   3.7  
At4g18150.1 68417.m02697 hypothetical protein                          28   6.4  
At3g26910.1 68416.m03367 hydroxyproline-rich glycoprotein family...    28   8.5  

>At5g58160.1 68418.m07280 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|Q05858 Formin (Limb deformity protein) {Gallus
           gallus}; contains Pfam profile PF02181: Formin Homology
           2(FH2) Domain
          Length = 1307

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +1

Query: 520 PASEGPPMLLREPTTNKNAK*ASRSLP-TPSAPARLETM*SLPPP 651
           P    PP     PT   N   A +S P  P AP RL T  + PPP
Sbjct: 728 PPPPPPPPPPAPPTPQSNGISAMKSSPPAPPAPPRLPTHSASPPP 772


>At4g18150.1 68417.m02697 hypothetical protein 
          Length = 762

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
 Frame = +1

Query: 445 GFTNNIQRINLASGSNNFAGTWPGLPASEG-----PPMLLREPTTNKNAK*ASRSLPTPS 609
           G T  IQ + +    N       G  AS G     P +L R+P +N +   +S+    P+
Sbjct: 111 GKTGKIQGVPVNRRENGARNHLAGSSASSGLLGRLPGLLRRQPPSNSDLP-SSKVKKAPT 169

Query: 610 APARLETM*SLPPPS 654
            P+   T+ SLP P+
Sbjct: 170 TPSDAVTLSSLPFPA 184


>At3g26910.1 68416.m03367 hydroxyproline-rich glycoprotein family
           protein common family member:At2g33490 [Arabidopsis
           thaliana]
          Length = 608

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/55 (25%), Positives = 30/55 (54%)
 Frame = +1

Query: 487 SNNFAGTWPGLPASEGPPMLLREPTTNKNAK*ASRSLPTPSAPARLETM*SLPPP 651
           +++++G +  LP    PP+L   P ++ + + +  + P P++  RL  +  LP P
Sbjct: 447 ADSYSGAFCPLPT---PPVLQSHPHSSSSPRVSPTASPPPASSPRLNELHELPRP 498


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,681,076
Number of Sequences: 28952
Number of extensions: 278239
Number of successful extensions: 920
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)