Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30086
         (500 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11410.1 68417.m01839 short-chain dehydrogenase/reductase (SD...    28   4.1  
At4g31970.1 68417.m04545 cytochrome P450 family protein similar ...    27   7.1  
At3g59000.1 68416.m06576 F-box family protein contains F-box dom...    27   7.1  
At5g62310.1 68418.m07822 incomplete root hair elongation (IRE) /...    27   9.4  
At4g33300.1 68417.m04737 disease resistance protein (CC-NBS-LRR ...    27   9.4  

>At4g11410.1 68417.m01839 short-chain dehydrogenase/reductase (SDR)
           family protein contains INTERPRO family IPR002198
           Short-chain dehydrogenase/reductase (SDR) superfamily
          Length = 317

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +3

Query: 264 LEELAYVRLDENTAEKVFINRAKRILIVSSDGHLAXWRCAPTFESAN 404
           L  L   R+ +  +E    NR  RI+IVSS+GH   +R    F+  N
Sbjct: 144 LTNLLLERMKKTASES---NREGRIVIVSSEGHRFAYREGVQFDKIN 187


>At4g31970.1 68417.m04545 cytochrome P450 family protein similar to
           cytochrome P450 82C1 (CYP82C1p)(GI:2739004) [Glycine
           max]; flavonoid 3 ,5'-hydroxylase, Campanula medium,
           PATCHX:D1003951
          Length = 523

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 17/72 (23%), Positives = 29/72 (40%)
 Frame = +3

Query: 30  DLFSKKTAMSKRTVLNENYKGIVESMSIPAEIHERNGKKYASVGSILPIHCCPPEELERR 209
           DL+S          +  + K  +E MS+   +    GK+Y   GS+ P       +  + 
Sbjct: 161 DLYSLWVKKGGSEPVMVDLKSWLEDMSLNMMVRMVAGKRYFGGGSLSPEDAEEARQCRKG 220

Query: 210 AESTHHYCGVFT 245
             +  H  G+FT
Sbjct: 221 VANFFHLVGIFT 232


>At3g59000.1 68416.m06576 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 491

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +3

Query: 213 ESTHHYCGVFTDELLA--PLEELAYVRLDENTAEKVFINRAKRILIVSSDGHL 365
           +S   Y   F   LLA   LEEL  V ++   ++    N + + L + SDGHL
Sbjct: 170 DSVWFYVDKFETLLLALPALEELVLVDVNWLDSDVTISNASLKTLTIDSDGHL 222


>At5g62310.1 68418.m07822 incomplete root hair elongation (IRE) /
           protein kinase, putative nearly identical to IRE
           (incomplete root hair elongation) [Arabidopsis thaliana]
           gi|6729346|dbj|BAA89783
          Length = 1168

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +3

Query: 267 EELAYVRLDENT---AEKVFINRAKRILIVSSDGHLAXWRCAPTFESANRXIAGTP 425
           + LA  + D+N+   A+ V +N A+     SS+  ++ W+  P+    NR +  TP
Sbjct: 379 QNLAGKQDDQNSNSGADGVEVNTARSTDSTSSNFRMSSWKKLPSAAEKNRSLNNTP 434


>At4g33300.1 68417.m04737 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 816

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 99  ESMSIPAEIHERNGKKYASVGSILPIHCCPPE 194
           E  ++P EI E  G KY  +   + + C P E
Sbjct: 716 ELKTLPGEICELPGLKYLDISQCVSLSCLPEE 747


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,295,796
Number of Sequences: 28952
Number of extensions: 162076
Number of successful extensions: 438
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)