Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30067
(619 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 181 3e-46
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 181 3e-46
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 181 3e-46
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 64 9e-11
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 50 2e-06
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 50 2e-06
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 49 2e-06
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 49 2e-06
At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putati... 49 2e-06
At3g54040.1 68416.m05975 photoassimilate-responsive protein-rela... 31 0.61
At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN ... 30 1.4
At1g69410.1 68414.m07972 eukaryotic translation initiation facto... 29 3.3
At3g62640.1 68416.m07036 expressed protein 28 5.7
At1g26130.1 68414.m03190 haloacid dehalogenase-like hydrolase fa... 28 5.7
At5g60450.1 68418.m07582 auxin-responsive factor (ARF4) contains... 27 7.5
At3g52640.1 68416.m05799 nicastrin-related contains weak similar... 27 7.5
At1g28380.1 68414.m03487 expressed protein 27 7.5
At5g39880.1 68418.m04837 expressed protein 27 10.0
At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containi... 27 10.0
At2g33100.1 68415.m04058 cellulose synthase family protein simil... 27 10.0
At1g74250.1 68414.m08599 DNAJ heat shock N-terminal domain-conta... 27 10.0
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 181 bits (441), Expect = 3e-46
Identities = 87/134 (64%), Positives = 107/134 (79%), Gaps = 2/134 (1%)
Frame = +3
Query: 213 DVQFEDN--LPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSG 386
DV+FED LPPI+ +LEVQ+ RLVLEV+ HLG+N VRTIAMDGTEGLVRG+ VL++G
Sbjct: 95 DVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTG 154
Query: 387 SPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKV 566
+PI +PVG TLGRI+NV+GEPIDERG I T+ IH +AP VD++ QEIL TGIKV
Sbjct: 155 APITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKV 214
Query: 567 VDLLAPYAKGERLG 608
VDLLAPY +G ++G
Sbjct: 215 VDLLAPYQRGGKIG 228
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 181 bits (441), Expect = 3e-46
Identities = 87/134 (64%), Positives = 107/134 (79%), Gaps = 2/134 (1%)
Frame = +3
Query: 213 DVQFEDN--LPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSG 386
DV+FED LPPI+ +LEVQ+ RLVLEV+ HLG+N VRTIAMDGTEGLVRG+ VL++G
Sbjct: 98 DVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTG 157
Query: 387 SPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKV 566
+PI +PVG TLGRI+NV+GEPIDERG I T+ IH +AP VD++ QEIL TGIKV
Sbjct: 158 APITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKV 217
Query: 567 VDLLAPYAKGERLG 608
VDLLAPY +G ++G
Sbjct: 218 VDLLAPYQRGGKIG 231
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 181 bits (441), Expect = 3e-46
Identities = 87/134 (64%), Positives = 107/134 (79%), Gaps = 2/134 (1%)
Frame = +3
Query: 213 DVQFEDN--LPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSG 386
DV+FED LPPI+ +LEVQ+ RLVLEV+ HLG+N VRTIAMDGTEGLVRG+ VL++G
Sbjct: 95 DVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTG 154
Query: 387 SPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKV 566
+PI +PVG TLGRI+NV+GEPIDERG I T+ IH +AP VD++ QEIL TGIKV
Sbjct: 155 APITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKV 214
Query: 567 VDLLAPYAKGERLG 608
VDLLAPY +G ++G
Sbjct: 215 VDLLAPYQRGGKIG 228
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
putative very strong similarity to SP|P23413 ATP
synthase alpha chain, mitochondrial (EC 3.6.3.14)
{Brassica campestris}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF00306: ATP synthase ab C terminal, PF02874:
ATP synthase alpha/beta family beta-barrel domain
Length = 777
Score = 63.7 bits (148), Expect = 9e-11
Identities = 30/103 (29%), Positives = 52/103 (50%)
Frame = +3
Query: 294 VAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 473
+A +L V + G + G V +GS + +P G LGR+++ +G PID +G +
Sbjct: 334 MALNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGKGAL 393
Query: 474 PTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKGER 602
+ + +AP ++ E + TG+K VD L P +G+R
Sbjct: 394 SDHEQRRVEVKAPGILERKSVHEPMQTGLKAVDSLVPIGRGQR 436
>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 49.6 bits (113), Expect = 2e-06
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Frame = +3
Query: 309 GENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDK 485
GE V + +GT G+ + +G ++ PV + LGRI N G+PID PI +
Sbjct: 64 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA 122
Query: 486 TAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKGERL 605
I + + + +E++ TGI +D++ A+G+++
Sbjct: 123 YLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKI 162
>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 49.6 bits (113), Expect = 2e-06
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Frame = +3
Query: 309 GENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDK 485
GE V + +GT G+ + +G ++ PV + LGRI N G+PID PI +
Sbjct: 64 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA 122
Query: 486 TAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKGERL 605
I + + + +E++ TGI +D++ A+G+++
Sbjct: 123 YLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKI 162
>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
B subunit / vacuolar proton pump B subunit / V-ATPase 57
kDa subunit identical to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}
Length = 486
Score = 49.2 bits (112), Expect = 2e-06
Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Frame = +3
Query: 309 GENTVRTIAMDGTEGLV-RGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDK 485
GE V + +GT G+ + V +G ++ PV + LGRI N G+PID PI +
Sbjct: 63 GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA 121
Query: 486 TAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKGERL 605
I + + + +E++ TGI +D++ A+G+++
Sbjct: 122 YLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKI 161
>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 485
Score = 49.2 bits (112), Expect = 2e-06
Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Frame = +3
Query: 309 GENTVRTIAMDGTEGLV-RGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDK 485
GE V + +GT G+ + V +G ++ PV + LGRI N G+PID PI +
Sbjct: 63 GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA 121
Query: 486 TAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKGERL 605
I + + + +E++ TGI +D++ A+G+++
Sbjct: 122 YLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKI 161
>At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 330
Score = 49.2 bits (112), Expect = 2e-06
Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Frame = +3
Query: 309 GENTVRTIAMDGTEGLV-RGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDK 485
GE V + +GT G+ + V +G ++ PV + LGRI N G+PID PI +
Sbjct: 63 GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA 121
Query: 486 TAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKGERL 605
I + + + +E++ TGI +D++ A+G+++
Sbjct: 122 YLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKI 161
>At3g54040.1 68416.m05975 photoassimilate-responsive protein-related
contains weak similarity to mRNA inducible by sucrose
and salicylic acid expressed in sugar-accumulating
tobacco plants (GI:871487) [Nicotiana tabacum]
Length = 183
Score = 31.1 bits (67), Expect = 0.61
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +3
Query: 228 DNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLV 359
+NLP + + + R +LE A GE T RT A+D EG+V
Sbjct: 29 ENLPTNMCSFSISASGKRCILETANVAGEFTCRTSAVD-VEGIV 71
>At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN
protein (ETT) identical to ETTIN GB:AF007788 from
[Arabidopsis thaliana]
Length = 608
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -2
Query: 318 CSHPNVGLPQVRGGEIDFAPQGHLESEAGY-LRIAHLPQH 202
C+ P + LP+ RG + + PQGHLE + I LP H
Sbjct: 59 CAGPLISLPK-RGSLVLYFPQGHLEQAPDFSAAIYGLPPH 97
>At1g69410.1 68414.m07972 eukaryotic translation initiation factor
5A, putative / eIF-5A, putative strong similarity to
eukaryotic initiation factor 5A (2) (Nicotiana
plumbaginifolia) GI:19702, SP|Q9AXQ6| Eukaryotic
translation initiation factor 5A-1 (eIF-5A 1)
{Lycopersicon esculentum}
Length = 158
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -3
Query: 458 VNRFADY--IDDASEGFSSHRDTNG*ARVEYRLPTD*AFSTVHGNG 327
VNR DY ID + +GF S NG + + +LPTD A T NG
Sbjct: 85 VNR-VDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDEALLTQLKNG 129
>At3g62640.1 68416.m07036 expressed protein
Length = 110
Score = 27.9 bits (59), Expect = 5.7
Identities = 16/65 (24%), Positives = 27/65 (41%)
Frame = -1
Query: 418 VSAPTGIRMGEPESSTGCPRTKPSVPSMAMVRTVFSPKCWATSSTRRGDRFCTSRAFRIG 239
V T + P+S P P S + RT +P + T+R R T + + +
Sbjct: 27 VGGTTQVYSTRPDSPKFQPSIPPPPGSTSKTRTTATPWRLIDAETKRKKRIATYKTYALE 86
Query: 238 GRLSS 224
G++ S
Sbjct: 87 GKVKS 91
>At1g26130.1 68414.m03190 haloacid dehalogenase-like hydrolase
family protein similar to Potential
phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
sapiens [SP|Q9Y2Q0, SP|O43520], Mus musculus [SP|P98200,
SP|P70704], {Bos taurus} SP|Q29449; contains InterPro
accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 1184
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +3
Query: 441 IGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKGERL 605
+ E + + G I +DKT + + EF+ S+ G+ V++ KG L
Sbjct: 417 LNEELGQVGTILSDKTGTLTCNSMEFIKCSIAGTAYGRGVTEVEMAMDKRKGSAL 471
>At5g60450.1 68418.m07582 auxin-responsive factor (ARF4) contains
Pfam profile: PF02362 B3 DNA binding domain; identical
to cDNA auxin response factor 4 (ARF4) GI:4102597
Length = 788
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 318 CSHPNVGLPQVRGGEIDFAPQGHLESEA 235
C+ P LP+ +G + + PQGHLE +A
Sbjct: 70 CAGPLTCLPK-KGNVVVYFPQGHLEQDA 96
>At3g52640.1 68416.m05799 nicastrin-related contains weak similarity
to Nicastrin precursor (Swiss-Prot:Q92542) [Homo
sapiens]
Length = 676
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -3
Query: 572 IDDFYTSYENLLLHRHVDKLWSFSMNSSSLV 480
++DF T++ N H H+D L ++NSSS+V
Sbjct: 421 LEDFDTNFVNKFYHSHLDDL--SNINSSSVV 449
>At1g28380.1 68414.m03487 expressed protein
Length = 612
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = -1
Query: 553 VTRISCCTDMSTN---SGASA*IAAVLSVGMGPRSSIGSP 443
VTR SC ++STN SG + I+ LS G+ P + P
Sbjct: 498 VTRKSCWDNLSTNSRKSGVFSMISTRLSTGLSPNPATTKP 537
>At5g39880.1 68418.m04837 expressed protein
Length = 363
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 121 LQSMPLTRGTMLLNLQEKAKVRLLPLSVLW*MCNSKITCL 240
LQ++P T T +LN +E++ + ++ MC +T L
Sbjct: 44 LQTLPFTEITEILNRKERSAPKTPEFKAMFTMCKGYVTYL 83
>At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 691
Score = 27.1 bits (57), Expect = 10.0
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = -1
Query: 454 IGSPI-TLMMRPRVSAPTGIRMGEPESSTGCPRTKPSVPSMAMVRTVFSPKCWATSSTRR 278
+GSP+ TLM R S+ S+G KPSV S R + K + +
Sbjct: 40 LGSPVSTLMPRGSASSSAAATPTSSSGSSGSASGKPSVSSQMAKRLDDAYKSHSGELSSP 99
Query: 277 GDRF-CTSRAFRIGGRLSSN 221
G T+R + G R SS+
Sbjct: 100 GSGMPTTTRILKPGHRRSSS 119
>At2g33100.1 68415.m04058 cellulose synthase family protein similar
to gi:2827143 from Arabidopsis thaliana (Ath-B)
Length = 1036
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -1
Query: 400 IRMGEPESSTGCPRTKPSVPSMAMVRTVFSPKCWATSSTRRGDR 269
++ G P + PR P++A V S CW +T GDR
Sbjct: 689 VKNGRPPGALLLPRPPLDAPTVAEAIAVIS--CWYEDNTEWGDR 730
>At1g74250.1 68414.m08599 DNAJ heat shock N-terminal
domain-containing protein contains Pfam domains PF00226:
DnaJ domain and PF00096: Zinc finger, C2H2 type
Length = 630
Score = 27.1 bits (57), Expect = 10.0
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = -3
Query: 590 GIRSEQI-DDFYTSYENLLLHRHVDKLWSFSMNSSSLVGGDGTALVNRFADYIDDASE-- 420
GI E D+ +SY L L RH DKL + S + LV+ + + + D E
Sbjct: 17 GISKESSPDEIRSSYRRLALQRHPDKLMKAAGLSEAEATAQFQELVHAY-EVLSDPKERA 75
Query: 419 GFSSHR 402
+ SHR
Sbjct: 76 WYDSHR 81
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,157,569
Number of Sequences: 28952
Number of extensions: 298807
Number of successful extensions: 806
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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