Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30056
         (665 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17820.1 68414.m02206 expressed protein                             31   0.52 
At3g27930.1 68416.m03486 expressed protein                             30   1.6  
At5g47430.1 68418.m05844 expressed protein                             28   4.9  
At5g41460.1 68418.m05035 fringe-related protein strong similarit...    28   6.4  
At4g17410.1 68417.m02607 expressed protein                             28   6.4  
At2g25920.1 68415.m03110 expressed protein                             27   8.5  

>At1g17820.1 68414.m02206 expressed protein
          Length = 803

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +1

Query: 85  DDYKCISDHLAANSKCIPGRGQIPSQYEIPVFQFEIPY 198
           +D K  S H +++ KC PG+  +    ++P+F   + +
Sbjct: 266 EDRKTYSHHGSSSGKCFPGKNNMTDDTDVPIFSRSVSH 303


>At3g27930.1 68416.m03486 expressed protein
          Length = 425

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -1

Query: 515 GLMWKMGRPPARSANVKAEHKSKL 444
           G++WKMG+ P   A+V AE+ S+L
Sbjct: 391 GIVWKMGKRPMYQADVDAENFSEL 414


>At5g47430.1 68418.m05844 expressed protein 
          Length = 879

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 94  KCISDHLAANSKCIPGRGQIPSQYEIP 174
           KCI DH+ + S C+ GR  + +   +P
Sbjct: 319 KCIRDHIISKSMCVCGRSDVLADDLLP 345


>At5g41460.1 68418.m05035 fringe-related protein strong similarity
           to unknown protein (pir||T13026) similarity to predicted
           proteins + similar to hypothetical protein GB:AAC23643
           [Arabidopsis thaliana] + weak similarity to Fringe
           [Schistocerca gregaria](GI:6573138);Fringe encodes an
           extracellular protein that regulates Notch signalling.
          Length = 524

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 202 NATYIDHNL-ITRNHDKCRVSEFYDNVRTLKTVLTVDCPWLNFESNRT 342
           +ATY+ + L +  N   C+V  F   VR L  ++    P + F +N+T
Sbjct: 41  SATYVVYTLKLISNSRACQVEPFSAVVRRLNDIVNSSQPLILFHTNQT 88


>At4g17410.1 68417.m02607 expressed protein 
          Length = 744

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +1

Query: 76  CFLDDY--KCISDHLAANSKCIPGRGQIPSQYEIP 174
           C L  Y  KCI DH+ A S C+ G   + +   +P
Sbjct: 222 CCLKSYCDKCIRDHIIAKSMCVCGATHVLADDLLP 256


>At2g25920.1 68415.m03110 expressed protein
          Length = 280

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 68  TGPASWTITNASPTTWPRTRNV-SRAEGRSPRSTRYRCSS 184
           T PAS  I+NA+ TT P++R   S  EGR P S    C S
Sbjct: 167 TCPASM-ISNAATTTTPQSRQRGSDTEGRFPSSPSDICHS 205


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,778,744
Number of Sequences: 28952
Number of extensions: 312093
Number of successful extensions: 840
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)