Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30054
(626 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 189 2e-48
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 189 2e-48
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 185 2e-47
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 185 2e-47
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 185 2e-47
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 184 6e-47
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 115 2e-26
At5g38830.1 68418.m04697 tRNA synthetase class I (C) family prot... 32 0.36
At3g52860.1 68416.m05825 expressed protein 30 1.4
At3g18100.2 68416.m02302 myb family transcription factor (MYB4R1... 29 1.9
At3g18100.1 68416.m02301 myb family transcription factor (MYB4R1... 29 1.9
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 29 2.5
At4g28470.1 68417.m04073 26S proteasome regulatory subunit, puta... 28 5.8
At3g21370.1 68416.m02698 glycosyl hydrolase family 1 protein con... 28 5.8
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 189 bits (460), Expect = 2e-48
Identities = 90/166 (54%), Positives = 119/166 (71%)
Frame = +3
Query: 126 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRPAR 305
VPESVLK + + +++ ++ IFKRAEQY KEY K+ + IR R
Sbjct: 13 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKR 72
Query: 306 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 485
+A+ +G +YV EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++NKATVNML
Sbjct: 73 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNML 132
Query: 486 RIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKKL 623
R EPY+ +GYPNLKSV+EL+YKRG+ KL+ QRI +T NSIV++ L
Sbjct: 133 RRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQAL 178
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 189 bits (460), Expect = 2e-48
Identities = 90/166 (54%), Positives = 119/166 (71%)
Frame = +3
Query: 126 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRPAR 305
VPESVLK + + +++ ++ IFKRAEQY KEY K+ + IR R
Sbjct: 8 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKR 67
Query: 306 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 485
+A+ +G +YV EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++NKATVNML
Sbjct: 68 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNML 127
Query: 486 RIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKKL 623
R EPY+ +GYPNLKSV+EL+YKRG+ KL+ QRI +T NSIV++ L
Sbjct: 128 RRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQAL 173
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 185 bits (451), Expect = 2e-47
Identities = 90/173 (52%), Positives = 121/173 (69%)
Frame = +3
Query: 105 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKER 284
+++ VPESVLK Q + +K++ IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 285 DEIRPARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLN 464
+ I+ R+A+ +G +YV EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++N
Sbjct: 63 ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVN 122
Query: 465 KATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKKL 623
KAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KL+ QR +T NSIV++ L
Sbjct: 123 KATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGL 175
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 185 bits (451), Expect = 2e-47
Identities = 90/173 (52%), Positives = 121/173 (69%)
Frame = +3
Query: 105 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKER 284
+++ VPESVLK Q + +K++ IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 285 DEIRPARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLN 464
+ I+ R+A+ +G +YV EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++N
Sbjct: 63 ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVN 122
Query: 465 KATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKKL 623
KAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KL+ QR +T NSIV++ L
Sbjct: 123 KATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGL 175
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 185 bits (451), Expect = 2e-47
Identities = 90/173 (52%), Positives = 121/173 (69%)
Frame = +3
Query: 105 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKER 284
+++ VPESVLK Q + +K++ IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 285 DEIRPARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLN 464
+ I+ R+A+ +G +YV EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++N
Sbjct: 63 ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVN 122
Query: 465 KATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKKL 623
KAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KL+ QR +T NSIV++ L
Sbjct: 123 KATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGL 175
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 184 bits (447), Expect = 6e-47
Identities = 90/166 (54%), Positives = 117/166 (70%)
Frame = +3
Query: 126 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRPAR 305
VPESVLK Q + + ++ IFKRAEQY KEY KE++ I R
Sbjct: 8 VPESVLKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEKEKELISLKR 67
Query: 306 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 485
+A+ +G +YV EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++NKAT+NML
Sbjct: 68 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNML 127
Query: 486 RIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKKL 623
R EPY+ +G+PNLKSV+EL+YKRG+ KL+ QRI +T NSIVE+ L
Sbjct: 128 RRVEPYVTYGFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQAL 173
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 115 bits (277), Expect = 2e-26
Identities = 59/175 (33%), Positives = 96/175 (54%)
Frame = +3
Query: 99 KEDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIK 278
+E++K L +PE VLK + S KKK KR E +V E+R K
Sbjct: 3 EEEAKGLDYIPEIVLKKRKNRDELAFIRKKQLELGNSGKKKKKVSDIKRPEDFVHEFRAK 62
Query: 279 ERDEIRPARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVR 458
E D IR ++ + + P ++ L F+IRI+G N + PK +++L +L+ + GVF +
Sbjct: 63 EVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNNLQLKSVFTGVFAK 122
Query: 459 LNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKKL 623
+ L +PY+ +GYPN KSV++L+YK+G + G +P+T N+I+E+ L
Sbjct: 123 ATDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKGCTIIEGNPVPLTDNNIIEQAL 177
>At5g38830.1 68418.m04697 tRNA synthetase class I (C) family protein
similar to SP|Q06752 Cysteinyl-tRNA synthetase (EC
6.1.1.16) (Cysteine--tRNA ligase) (CysRS) {Bacillus
subtilis}; contains Pfam profile PF01406: tRNA
synthetases class I (C)
Length = 511
Score = 31.9 bits (69), Expect = 0.36
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Frame = +1
Query: 124 LYQSQCSSIVRGERLFALG---DYRLR*RGVLLPSRRRGKSSRGLNSTSRNTASRNVMKS 294
+ + C +V G+ F++ +Y + G LL R G+ ++S RN A + K+
Sbjct: 134 IIEKDCGYVVEGDVFFSVDKSPNYG-KLSGQLLEHTRAGERV-AVDSRKRNPADFALWKA 191
Query: 295 DQPDKHAIVATTTFPGKPNWHLSSESVVSTKFHRRSVKF 411
+PD+ + + PG+P WH+ ++ H S KF
Sbjct: 192 AKPDEPSWESPWG-PGRPGWHIECSAM---SVHYLSPKF 226
>At3g52860.1 68416.m05825 expressed protein
Length = 156
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 183 LQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEI 293
++ LK + IKK +F+ +++ VKE K RDE+
Sbjct: 117 MEEELKTKDELIKKHMRLFQESQKLVKEQIEKHRDEL 153
>At3g18100.2 68416.m02302 myb family transcription factor (MYB4R1)
contains Pfam profile: PF00249 Myb-like DNA-binding
domain
Length = 634
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +1
Query: 298 QPDKHAIVATTTFPGKPNWHLSSESVVSTKFHRRSVKFCNCLD 426
+ DK VA T F G NWH S+ V + ++ NCLD
Sbjct: 339 EEDKRVKVAVTLF-GSQNWHKISQFVPGRTQTQCRERWLNCLD 380
>At3g18100.1 68416.m02301 myb family transcription factor (MYB4R1)
contains Pfam profile: PF00249 Myb-like DNA-binding
domain
Length = 847
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +1
Query: 298 QPDKHAIVATTTFPGKPNWHLSSESVVSTKFHRRSVKFCNCLD 426
+ DK VA T F G NWH S+ V + ++ NCLD
Sbjct: 552 EEDKRVKVAVTLF-GSQNWHKISQFVPGRTQTQCRERWLNCLD 593
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 29.1 bits (62), Expect = 2.5
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +1
Query: 244 GLNSTSRNTASRNVMKSDQPDKHAIVATTTFPGKPNWHLSSESVVSTKFHR 396
G + T R+ +R + SD+ +K V+ T GK HLS E VS F R
Sbjct: 407 GASVTPRSIKARRALLSDKNEK---VSVTERNGKLGTHLSDEISVSEGFRR 454
>At4g28470.1 68417.m04073 26S proteasome regulatory subunit, putative
contains Pfam domain PF01851: Proteasome/cyclosome repeat
Length = 1103
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/46 (30%), Positives = 28/46 (60%)
Frame = -2
Query: 496 SAIRSIFTVALFRRTNTPLFIWRSLNSCRTLRTFGETWLIPRIRMT 359
S R FT++ F+R N+ + I+R+ C TL + ++W+ +I+ +
Sbjct: 1059 SVPRKWFTISPFKRKNSFIAIYRNF-LCTTLISHSKSWISFQIQFS 1103
>At3g21370.1 68416.m02698 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to beta-glucosidase (GI:757740) [Brassica
napus]; similar to beta-glucosidase GB:AAB64244 from
[Arabidopsis thaliana], (Plant Mol. Biol. 34 (1), 57-68
(1997))
Length = 527
Score = 27.9 bits (59), Expect = 5.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 332 RSRGSQIGICHPNPWYQPSFTEG 400
+ +G +IGI H W++P EG
Sbjct: 263 KCKGGKIGIAHSPAWFEPEDVEG 285
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,773,457
Number of Sequences: 28952
Number of extensions: 258559
Number of successful extensions: 692
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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