Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30130
         (642 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57450.2 68418.m07178 DNA repair family protein contains simi...    30   1.5  
At5g57450.1 68418.m07177 DNA repair family protein contains simi...    30   1.5  
At3g28670.1 68416.m03578 expressed protein                             29   3.5  
At1g04700.1 68414.m00467 protein kinase family protein low simil...    29   3.5  
At5g28550.1 68418.m03483 hypothetical protein                          28   4.6  
At4g24265.1 68417.m03482 expressed protein                             28   4.6  
At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel factory-r...    28   6.1  
At2g44350.2 68415.m05517 citrate synthase, mitochondrial, putati...    28   6.1  
At2g44350.1 68415.m05516 citrate synthase, mitochondrial, putati...    28   6.1  
At4g39753.1 68417.m05629 kelch repeat-containing F-box family pr...    27   8.0  

>At5g57450.2 68418.m07178 DNA repair family protein contains
           similarity to Swiss-Prot:O43542 DNA-repair protein XRCC3
           (X-ray repair cross-complementing protein 3) [Homo
           sapiens]
          Length = 304

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 20/45 (44%), Positives = 24/45 (53%)
 Frame = +3

Query: 366 NSACDYLFSVDSLSRLESNVLRYLLSSGYDVIAPMLTRPGKAWSN 500
           N   D + + D LS L    LRYL SSG  V+ P L   G AW+N
Sbjct: 199 NQVTDLVETSDGLSGLRIGNLRYLYSSGRRVV-PSL---GLAWAN 239


>At5g57450.1 68418.m07177 DNA repair family protein contains
           similarity to Swiss-Prot:O43542 DNA-repair protein XRCC3
           (X-ray repair cross-complementing protein 3) [Homo
           sapiens]
          Length = 304

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 20/45 (44%), Positives = 24/45 (53%)
 Frame = +3

Query: 366 NSACDYLFSVDSLSRLESNVLRYLLSSGYDVIAPMLTRPGKAWSN 500
           N   D + + D LS L    LRYL SSG  V+ P L   G AW+N
Sbjct: 199 NQVTDLVETSDGLSGLRIGNLRYLYSSGRRVV-PSL---GLAWAN 239


>At3g28670.1 68416.m03578 expressed protein
          Length = 491

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +3

Query: 315 DFISEAEARNLAKERCINSACDYLFSVD--SLSRLESNVLRYLLSSGYDVIAP 467
           D++   E+  + KERCI        S+D   +S +E+     +  S +DVI+P
Sbjct: 381 DYLQPFESLEVVKERCIELMSMEHSSIDESKISEVETETSLLIAESMWDVISP 433


>At1g04700.1 68414.m00467 protein kinase family protein low
           similarity to EDR1 [Arabidopsis thaliana] GI:11127925;
           contains Pfam profile: PF00069 Eukaryotic protein kinase
           domain
          Length = 1042

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +1

Query: 208 IHLFIHNNVEYHENEVRNFSEPTLK--NMPQQNV*ILETSFQKQKQETLQRKD 360
           +H   + +V Y  ++   F +P L   N PQQN    ET+ QKQK   +   D
Sbjct: 350 VHKRANTDVPYFADQ-NGFFDPYLAAPNFPQQNRFFFETTTQKQKHPEVNLHD 401


>At5g28550.1 68418.m03483 hypothetical protein
          Length = 286

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +1

Query: 85  KIQLKEDNLPSVMMAVFIEQATPFLEDFLDQVIDTDYPKN-KIHLFIHNNVEYHENEVRN 261
           K  L ED LP   +  F+ +A      +LD +      +  K+H+FI  N    E+ ++ 
Sbjct: 180 KSDLSEDCLPKEAIIDFVSEACSKSAFYLDNLHQHGARETEKLHVFILENWPEAEDLIKK 239

Query: 262 FSEPT 276
             +PT
Sbjct: 240 LPDPT 244


>At4g24265.1 68417.m03482 expressed protein
          Length = 140

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 106 CPPSTESFSLYTAHSPHSLTKT 41
           CPP T SF   T H PH   +T
Sbjct: 56  CPPETSSFPWTTHHLPHQQEET 77


>At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel
           factory-related similar to RNA helicase GB:AAF03534
          Length = 1317

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/55 (29%), Positives = 31/55 (56%)
 Frame = -3

Query: 622 SADSKLVNEGHIPYSLYNSIYYVHIICGSRIKSSRVESPQKLDQALPGRVSIGAM 458
           + +++ V  G +P+S  +  YY HI   S  ++S VE  ++L   +  R+S+G +
Sbjct: 218 TCENESVLAGFVPFSTPSFKYYQHIKIPSPKRASLVEKLERL--TIKHRLSLGTL 270


>At2g44350.2 68415.m05517 citrate synthase, mitochondrial, putative
           strong similarity to SP|P20115 Citrate synthase,
           mitochondrial precursor  {Arabidopsis thaliana};
           contains Pfam profile PF00285: Citrate synthase
          Length = 474

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 27/90 (30%), Positives = 37/90 (41%)
 Frame = +3

Query: 237 ISRE*GEKFFGAYSKEYASAKRINSGDFISEAEARNLAKERCINSACDYLFSVDSLSRLE 416
           +  E GE       KEY   K +NSG  I       + +       C   F+   L  L 
Sbjct: 322 VVEECGEDISKEQLKEYVW-KTLNSGKVIP-GYGHGVLRNTDPRYVCQREFA---LKHLP 376

Query: 417 SNVLRYLLSSGYDVIAPMLTRPGKAWSNFW 506
            + L  L+S  Y+V+ P+LT  GK   N W
Sbjct: 377 DDPLFQLVSKLYEVVPPVLTELGKV-KNPW 405


>At2g44350.1 68415.m05516 citrate synthase, mitochondrial, putative
           strong similarity to SP|P20115 Citrate synthase,
           mitochondrial precursor  {Arabidopsis thaliana};
           contains Pfam profile PF00285: Citrate synthase
          Length = 473

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 27/90 (30%), Positives = 37/90 (41%)
 Frame = +3

Query: 237 ISRE*GEKFFGAYSKEYASAKRINSGDFISEAEARNLAKERCINSACDYLFSVDSLSRLE 416
           +  E GE       KEY   K +NSG  I       + +       C   F+   L  L 
Sbjct: 321 VVEECGEDISKEQLKEYVW-KTLNSGKVIP-GYGHGVLRNTDPRYVCQREFA---LKHLP 375

Query: 417 SNVLRYLLSSGYDVIAPMLTRPGKAWSNFW 506
            + L  L+S  Y+V+ P+LT  GK   N W
Sbjct: 376 DDPLFQLVSKLYEVVPPVLTELGKV-KNPW 404


>At4g39753.1 68417.m05629 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 390

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +2

Query: 527 FYARSADYMDIVYGVIKGVWNV 592
           FY RS D  D VY  I+  WNV
Sbjct: 245 FYVRSNDSKDSVYDPIREKWNV 266


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,389,020
Number of Sequences: 28952
Number of extensions: 261514
Number of successful extensions: 766
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)